Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02809 ATGGCTTCATCTTCCTCCGATCCCGGTAAGTCGGCGGAGACTTCGGAAGCGGCGGCGGCGGCGAACGACCAGCTTTTACTGTACAGAGGATTGAAAAAAGCGAAGAAAGAGAGAGGTTGCACTGCGAAAGAGAGAATCAGCAAAATGCCTCCTTGTGCCGCCGGAAAACGAAGCTCCATCTACCGTGGTGTCACCAGGCATAGATGGACTGGTCGTTATGAAGCACATCTTTGGGATAAAAGTACTTGGAACCAAAATCAGAATAAGAAAGGAAAGCAAGTTTACTTGGGAGCATATGATGATGAGGAAGCAGCGGCTAGAGCATATGACCTTGCTGCTCTGAAATATTGGGGTCCTGGGACTCTCATTAACTTTCCAGTGACTGATTATACAAGAGATCTCGAAGAAATGCAGAATGTTTCAAGAGAGGAATATCTTGCATCCTTACGGCGGAAGAGCAGTGGTTTTTCCAGAGGACTATCAAAATATCGTGGACTCTCCAGTCGATGGGAGCCATCATATGGTCGTATGGCTGGATCTGATTACTTCAGTAGCATACACTATGGTACAGGGGATGATTCAGCAGCTGAAAGTGAGTATGTAAGTGGTTTCTGCATAGATAGAAAGATTGACTTAACAAGTCACATCAAATGGTGGGGATCTAATAAGAGTCGACAACCTGATGCTGGAACAAGATTATCAGAAGAAAAGAAACATGGTTTTGCTGGAGATATTTGCAGTGAACTTAAAACATTGGAACAGAATGTCCAACCAACAGAACCATACCAGATGCCAGATTTAGGAAGGCCACACAATGAGAAAAAGCCCAGAAGTTCTTCAGTCTCTGCCTTAAGTATATTGTCACAATCAGCTGCTTACAAGAGCTTGCAAGATAAAGCATCTAAGAGACAGGAAAATAGTGCTGATAATGATGAGAATGAAAACAAAAATACAGTCAATGTGTTGGATCATGGAAAGGCAGTTGAGAAACCATCAAATCATGATGGTGGCAATGATCGACTCGACATTGCAGTGGGAATGAGTGGGGCATTGTCACTTCAGAGAAATGTTTACCCATTGACACCATTCTTGTCTGCACCGCTTTTGACAGCCTACAATACTGTTGATCCATTGGTAGATCCTGTTCTCTGGACATCTCTTGTTCCTATACTTCCTGCTGGCCTTTCTCGTACAGCTGAGGTTACAAAGACGGAGACCAGTTCAACATACACTATGTTTCAGCCAGAGGGGTGA 1254 0.4402 MASSSSDPGKSAETSEAAAAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWEPSYGRMAGSDYFSSIHYGTGDDSAAESEYVSGFCIDRKIDLTSHIKWWGSNKSRQPDAGTRLSEEKKHGFAGDICSELKTLEQNVQPTEPYQMPDLGRPHNEKKPRSSSVSALSILSQSAAYKSLQDKASKRQENSADNDENENKNTVNVLDHGKAVEKPSNHDGGNDRLDIAVGMSGALSLQRNVYPLTPFLSAPLLTAYNTVDPLVDPVLWTSLVPILPAGLSRTAEVTKTETSSTYTMFQPEG* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02809 417 Gene3D AP2/ERF domain 60 128 IPR036955 GO:0003700|GO:0006355
Rops8g02809 417 Pfam AP2 domain 60 118 IPR001471 GO:0003700|GO:0006355
Rops8g02809 417 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 300 - -
Rops8g02809 417 MobiDBLite consensus disorder prediction 259 281 - -
Rops8g02809 417 MobiDBLite consensus disorder prediction 295 338 - -
Rops8g02809 417 ProSiteProfiles AP2/ERF domain profile. 60 126 IPR001471 GO:0003700|GO:0006355
Rops8g02809 417 SMART rav1_2 60 132 IPR001471 GO:0003700|GO:0006355
Rops8g02809 417 PRINTS Ethylene responsive element binding protein signature 108 128 IPR001471 GO:0003700|GO:0006355
Rops8g02809 417 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Rops8g02809 417 MobiDBLite consensus disorder prediction 298 319 - -
Rops8g02809 417 FunFam AP2-like ethylene-responsive transcription factor 59 128 - -
Rops8g02809 417 SUPERFAMILY DNA-binding domain 59 127 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02809 Rops-Chr8 63314892 63318894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02809 19 415 AP2-EREBP Transcription Factor Family AT2G41710 65.281 1.01e-171 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g02809 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02809 K09285 - gmx:100786651 742.651