Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02807 ATGGGAACTGCTTGGAGGCAGTTGAAGGTTATGCTCAGGAAGAACTGGCTCCTTAAGATTCGTCACCCTTACGTTACCGCCGCTGAGATTTTGCTCCCAACGATTGTGTTGTTGCTGTTAGTAGCTGTAAGGACACGAGTGGATACACAAATTCATCCTGTTCAATCGCACATTCACAAAGACATGTTTGTGGAAGTGGGGAAAGGTATATCCCCTAACTTCCAACAAGTTTTGGAATCCTTGTGGGATAAGGGAGAGTATTTAGCTTTTGCACCAGATACGAGCGAGACCAAGCTGATGATAGACGTAGTGTCAATAAAATTTCCACTCTTGAAGCTTGTTAGTAGAGTATACAAAGATGAGGTAGAGTTGGAAACCTACATTCGGTCAGATGCTTATGGTACCTGCAATCAAGTAAGGAATTGTTCAAATCCCAAAATTAAAGGAGCAGTTGTATTTTATGAACAAGGTCCTCAGTCATTTGATTATAGCATACGCCTCAATCATACGTGGGCTTTCTCTGGTTTTCCGGATGTTAGAACAATAATGGATACAAATGGCCCTTTTCTTAATGACTTGGAACTTGGAGTTAGTGCTGTACCAACAATGCAATACAGCTTCAGTGGGTTTTTGACTCTCCAGCAAATGGTTGATTCATTCATAATATTGATAGCTCAGCAGTCTGACTCAAATTCCAGTGCTGAAAGTTTAAAGCTTCCTGGCTTCTATGACACTGATATCTCTTTGAAAATTCCATGGACTCAGTTTAACCCTGCTCACATACGAATAGCTCCATTTCCCACTCGAGAGTACACTGATGATGAGTTCCAGTCAATCATAAAGAAAGTCATGGGAATATTGTACCTATTGGGGTTTCTCTATCCAATTTCTCGCCTGATCAGTTATTCTGTGTTTGAGAAGGAACAGAAGATTAAAGAAGGACTCTATATGATGGGGCTGAAAGATGGTATATTTCATCTCTCATGGTTTATTACGTATGCTTTGCAGTTTGCAATTTCTTCTGGAGTCATTACAGCTTGCACCATGGATAATTTATTCAAGTATAGTGATAAGACACTGGTGTTTGCATACTTTTTCATTTTTGGGCTAAGTGCAATCATGCTGTCATTTTTCATATCAACATTTTTCAAACGGGCCAAAACAGCTGTAGCTGTTGGAACTCTGTCTTTTCTAGGTTGCTTTTTCCCTTATTACACTGTCAATGACGAGGGAGTTTCTATGATCTTTAAGGTTATTGCTTCTTTACTTTCACCTACGGCCTTTGCTCTGGGTTCGGTCAACTTTGCTGATTATGAGCGTGCTCATGTTGGACTTCGCTGGAGCAACATATGGAGGGAATCGTCTGGAGTGAACTTTTCCGCATGTCTTCTGATGATGATACTTGATACACTGCTATATTGTGCGTTTGGATTGTATTTTGACAAGGTTCTTCCAAGGGAATATGGACTGCGACATCCATGGAACTTTATTTTCCAAAAGGACTTCTGGAGGAAGAAAAAAACTGTAAATCATTGTACTAATTCCGAGTCAGAAGGGAATCTTTTAGGGGAAGACACTTTCAAACCTGCTATAGAAGCAATAAGCTTAGACATGAAACAACAGGAGCTTGATGGCAGGTGCCTTCAAATCAGGAATTTGCATAAAGTATATGCTACTAAAAAAGGAGATTGCTGTGCTGTTAACTCATTACAGCTGTCATTGTACGAAAGTCAAATTCTTGCTCTTCTAGGACATAATGGAGCTGGTAAAAGCACGACAATCTCAATGCTTGTTGGTCTTCTTCCTCCTACTTCTGGAGATGCTTTAGTTTTTGGAAAGAACATTGTATCAGATATTGATGAGATACGGAAGGTTTTGGGTGTCTGCCCGCAACATGATATACTCTTTCCTGAATTGACTGTGAGAGAGCATTTAGAACTATTTGCCACATTAAAGGGTGTGGAGGAAAACTCATTGGAGGGTGTTGTTACTAATATGGCTGATGAGGTGGGCCTGGCGGATAAATTCAACAGTATTGTGAGAGCTCTTTCTGGTGGCATGAAGAGGAAATTGTCTCTTGGAATTGCATTGATTGGAAACAGTAAGGTTATAGTTCTTGATGAACCTACAAGTGGAATGGATCCATACTCAATGCGCTTGACTTGGCAGTTAATAAAAAAAATTAAGAAGGGCAGGATAATTTTGCTAACAACCCATTCTATGGATGAAGCAGATGAACTAGGTGACCGGATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGCTCCCTTTTCTTGAAGCATCACTATGGCGTTGGTTATACTCTAACTCTTGTGAAGTCAGCTCCTACTACTTCTATTGCTGGTGATATAGTATACCGTCATGTTCCATCAGCAACCTGTGTAAGCGAGGTCGGAACTGAGATTTCCTTCAGGCTTCCTATGGCATCCTCATTAGCCTTTGAGGGAATGTTTAGGGAAATTGAAGGTTGCATGAAAAAACCAGTGTCAAACATGGAAGTAAATGGCAATGCTGACAAAGACAGTTATGGTATTGAAAGCTATGGTATATCTGTAACAACCCTGGAGGAGGTATTCTTGAGAGTTGCAGGATGTGACTATAATGAAGTTGAATGCTTTGAAGAAAATAACCATTCCCTTATATCAGATTCTGTGGCTTCTCTTCCTTTTAATGATCATCCATCCACAAAATTATGTTCTCTTAAAGTTTTTGGAAATTATAAGAAGATTCTTGGTTTCTTCTCGACCATGGTGGGAAGAGCTTTTGATTTAATTTTTGCTACAGTTGTTAGTGTCATCAACTTCTTGGGAATGCAGTGTTGTAGCTGTTGTCTTATTACTAGGTCAACATTTTGGCAACATTCTAAAGCTTTATTCATTAAGAGGGCAATATCTGCTCGGAGAGATCATAAAACAATTATTTTCCAGCTAATTATTCCTGCTGTCTTCTTGTTTATTGGTCTTCTATTTCTCGTGCTCAAGCCACATCCTGATCAGCAGTCACTGATCCTTTCAACTTCTTATTTTAATCCTCTACTGAGCGGTGGGGGTGGGGGAGGACCCATTCCGTTTAATCTATCATTGCCAATTGCTGAAAAGGTAGCGCAAAATGTCAAAGGAGGGTGGATTCAAAGGTGTAAGCCAAGCTCATACAAATTCCCCAATTCAGAAAAGGCATTAGCTGATGCTGTGGAAGCAGCGGGGCCAACTCTGGGACCTGCTCTACTTTCAATGAGTGAATATTTGATGTCTAGCTTTAATGAATCGTACCAGTCTAGGTATGGGGCAATTGTGATGGATGATCAGAATAATGATGGAAGCTTAGGCTACACTGTATTACACAACTTTTCTTGTCAACATGCTGCTCCCACCTTTATAAATTTGATGAATTCAGCAATTCTTAGGCTTGCTACTCATAACATGAATATGACAATTCAGACACGCAACCACCCTCTACCTATGACACGAAGCCAGCGCTTACAACGTCATGACCTGGATGCCTTCTCTGCTGCTATCATTGTCAATATTGCCTTCTCTTTTATACCTGCCTCGTTTGCTGTTTCAATTGTTAAGGAACGTGAAGTGAAAGCTAAGCACCAACAACTAATCAGTGGGGTTTCAGTCCTTTCCTATTGGGCTTCGACATTTATGTGGGACTTCGTGAGCTTCTTGTTTCCAGCCTCTAGTGCCATAGTTCTCTTTTACATCTTTGGTCTGGATCAGTTTGTTGGAGGGGTTTCTTTGTTACCAACAATCCTCATGCTTTTGGAATATGGACTTGCAATGGCATCGTCAACTTATTGCCTTACCTTTTTCTTTTTTGACCATACCATGGCCCAGAACGTGGTTCTCCTGGTCCACTTTTTTACTGGATTGATACTAATGGTTATCTCATTCATTATGGGAATCATCCCATCCACAATAAGCGCCAATTCTATTCTTAAGAATTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGTCTTGCTTCATTAGCTCTTTTACGGCAAGGAATGAAAGATAAAACAAGTGATGGAGTGTTTGATTGGAATGTTACTGGTGCCTCCATTTGTTATCTTGCTGTTGAGAGCTTTACTTACTTTTTGTTGACACTCGCGCTTGAAATTTTTCCTTCTTTCAAATTGACTTCACTCATGATCAAGAATTGGTGGAGGAAAATTAATATCTTCCAGCATAACACTACTTATCTGGAACCTCTGTTAGAACCTTCCCCAGAAACTGAAATGGATCTTGATGAAGATGTTGATGTGAAAACAGAAAGAAATAGAGTACTTTCAGGTTCCCTTGACAATGCCATTATCTATTTGCGCAATCTTTGTAAGGTGTATTCTGAAGAAAAGTATCATGGGAAAAAGGTTGCAGTAGACTCATTAACCTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGAACAAATGGAGCTGGAAAGACCACAACTCTTTCTATGCTATGTGGGGAAGAATCTCCCTCTGATGGGACTGCTTTTATTTTTGGCAAAGATATATGCTCCCATCCCAAGGCTGCTCGTCAATATATTGGATATTGTCCACAATTTGATGCTCTATTGGAATACTTAACTGTCCGAGAGCATCTTGAGCTTTATGCTAGAATAAAAGGTGTTCCAGACTACACAATAGACAATGTTGTTATGGAAAAGTTGGTGGAGTTTGACTTATTGAAGCACGCTAATAAACCATCATTTTCTCTTAGTGGAGGGAATAAAAGGAAACTATCTGTTGCAATTGCTATGATTGGAGATCCTCCTATTGTCATTCTTGATGAGCCATCCACAGGTATGGATCCCATTGCCAAAAGGTTCATGTGGGATGTAATATCGAGGATCTCAACTAGACGAGGAAAGACTGCAGTGATTCTTACTACCCACAGCATGAATGAAGCTCAAGCCTTATGTACCAGAATAGGGATTATGGTTGGTGGACGACTAAGATGCATTGGAAGTCCTCAGCATCTAAAAACAAGATTCGGGAATCATCTAGAACTAGAGGTAAAACCGACTGAAGTGAGCTCTGTGGACTTACAAACACTCTGCCAAGCTATTCAGGAAATACTTTTTGAAGTCCCTTCTCAACCTAGAAGCTTACTTAATGACCTTGAAATTTGCATTGGAGGTACTGACTCCATCACCTCAGGAAATACCTCTGTTGCAGAGATTAGCTTGACACGAGAAATGATAGGCTTAATTGGGCGCTGGCTTGGCAACGAAGAAAGAGTGAAGACTCTAATCTCTTGTACACCTGTCTATGATGGAGCTTCTCAGGAACAATTATCAGAACAATTATTTCGAGATGGTGGTATTCCATTGCCAGTATTTTCTGAGTGGTGGTTGTCCAAACAAAAATTCTCAGAAATTGATTCATTTATTCTCTCTACATTTCATGGAGCAAGATGCCAAGGGTACAATGGTTTGAGCATCAGATACCAGTTACCATACGATGAGGATTTTTCCCTGGCAGATGTTTTTGGACTTCTTGAAGGAAACAGAAATAGATTAGGGATTGCAGAGTACAGCATCAGCCAATCAACTCTGGAGACAATATTTAATCATTTTGCAGCTAATTCATGA 5640 0.4009 MGTAWRQLKVMLRKNWLLKIRHPYVTAAEILLPTIVLLLLVAVRTRVDTQIHPVQSHIHKDMFVEVGKGISPNFQQVLESLWDKGEYLAFAPDTSETKLMIDVVSIKFPLLKLVSRVYKDEVELETYIRSDAYGTCNQVRNCSNPKIKGAVVFYEQGPQSFDYSIRLNHTWAFSGFPDVRTIMDTNGPFLNDLELGVSAVPTMQYSFSGFLTLQQMVDSFIILIAQQSDSNSSAESLKLPGFYDTDISLKIPWTQFNPAHIRIAPFPTREYTDDEFQSIIKKVMGILYLLGFLYPISRLISYSVFEKEQKIKEGLYMMGLKDGIFHLSWFITYALQFAISSGVITACTMDNLFKYSDKTLVFAYFFIFGLSAIMLSFFISTFFKRAKTAVAVGTLSFLGCFFPYYTVNDEGVSMIFKVIASLLSPTAFALGSVNFADYERAHVGLRWSNIWRESSGVNFSACLLMMILDTLLYCAFGLYFDKVLPREYGLRHPWNFIFQKDFWRKKKTVNHCTNSESEGNLLGEDTFKPAIEAISLDMKQQELDGRCLQIRNLHKVYATKKGDCCAVNSLQLSLYESQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFATLKGVEENSLEGVVTNMADEVGLADKFNSIVRALSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTTSIAGDIVYRHVPSATCVSEVGTEISFRLPMASSLAFEGMFREIEGCMKKPVSNMEVNGNADKDSYGIESYGISVTTLEEVFLRVAGCDYNEVECFEENNHSLISDSVASLPFNDHPSTKLCSLKVFGNYKKILGFFSTMVGRAFDLIFATVVSVINFLGMQCCSCCLITRSTFWQHSKALFIKRAISARRDHKTIIFQLIIPAVFLFIGLLFLVLKPHPDQQSLILSTSYFNPLLSGGGGGGPIPFNLSLPIAEKVAQNVKGGWIQRCKPSSYKFPNSEKALADAVEAAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQNNDGSLGYTVLHNFSCQHAAPTFINLMNSAILRLATHNMNMTIQTRNHPLPMTRSQRLQRHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSVLSYWASTFMWDFVSFLFPASSAIVLFYIFGLDQFVGGVSLLPTILMLLEYGLAMASSTYCLTFFFFDHTMAQNVVLLVHFFTGLILMVISFIMGIIPSTISANSILKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTGASICYLAVESFTYFLLTLALEIFPSFKLTSLMIKNWWRKINIFQHNTTYLEPLLEPSPETEMDLDEDVDVKTERNRVLSGSLDNAIIYLRNLCKVYSEEKYHGKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAARQYIGYCPQFDALLEYLTVREHLELYARIKGVPDYTIDNVVMEKLVEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLQTLCQAIQEILFEVPSQPRSLLNDLEICIGGTDSITSGNTSVAEISLTREMIGLIGRWLGNEERVKTLISCTPVYDGASQEQLSEQLFRDGGIPLPVFSEWWLSKQKFSEIDSFILSTFHGARCQGYNGLSIRYQLPYDEDFSLADVFGLLEGNRNRLGIAEYSISQSTLETIFNHFAANS* 1880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02807 1879 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1086 1387 IPR026082 GO:0016020|GO:0055085|GO:0140359
Rops8g02807 1879 FunFam ABC transporter A family member 1 1440 1694 - -
Rops8g02807 1879 ProSitePatterns ABC transporters family signature. 683 697 IPR017871 GO:0005524|GO:0016887
Rops8g02807 1879 SMART AAA_5 576 758 IPR003593 GO:0016887
Rops8g02807 1879 SMART AAA_5 1481 1668 IPR003593 GO:0016887
Rops8g02807 1879 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 548 781 IPR003439 GO:0005524
Rops8g02807 1879 CDD ABC_subfamily_A 1451 1677 - -
Rops8g02807 1879 ProSitePatterns ABC transporters family signature. 1588 1602 IPR017871 GO:0005524|GO:0016887
Rops8g02807 1879 CDD ABC_subfamily_A 548 769 - -
Rops8g02807 1879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1450 1680 IPR027417 -
Rops8g02807 1879 Pfam ABC-2 family transporter protein 213 478 IPR013525 GO:0016020|GO:0140359
Rops8g02807 1879 Pfam ABC-2 family transporter protein 980 1382 IPR013525 GO:0016020|GO:0140359
Rops8g02807 1879 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1451 1689 IPR003439 GO:0005524
Rops8g02807 1879 FunFam ATP-binding cassette sub-family A member 12 540 785 - -
Rops8g02807 1879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 786 IPR027417 -
Rops8g02807 1879 Gene3D - 535 784 IPR027417 -
Rops8g02807 1879 Gene3D - 1443 1693 IPR027417 -
Rops8g02807 1879 Pfam ABC transporter 1473 1615 IPR003439 GO:0005524
Rops8g02807 1879 Pfam ABC transporter 568 711 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02807 Rops-Chr8 63230619 63301859 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02807 528 784 Calmodulin-binding Proteins AT2G36910 26.415 1.85e-16 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02807 K05643 - gmx:100803263 3395.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02807 8 63230619 63301859 Rops8g02807 8 63230619 63301859 ECH