Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02800 ATGGTGATGCTTTGGGAAGATCTGACAGTACAGCATCCTAGTTTTGGGGCAAACAAGAAGAAGTTGCTTAATGGGGTCACTGGTTTTGCTGAACCTGGTAGGATCATGGCTGTCATGGGTCCTTCTGGCTCCGGCAAAACCACCCTCCTCGACTCTTTGGCTGGAAGACTTTCTGCAAATGTGGTGATGACCGGCAACATTCTAATCAATGGGAAGGAGAGAAGCTTGTACTGCAGAGAAGTGTCTTACATTGCTCAAGAGGAACTCTTTTTGGGAACTTTGACTGTAAAAGAAACCCTCACCTACTCAGCAAATATGAGGCTTCCTTCTAAAATGACCAAAGAAGAGATAAATAAAGTGGTTGAAGAAACAATAATGAAAATGGGTCTCGAAGAATGTGCAAATAATAAGATTGGGAATTGGCATTCACGTGGAATAAGTAATGGTGAAAAGAAGAGACTTAGCATTGGCTTAGAGGTTTTGACACAACCTCATGTCTTGCTTCTTGATGAACCTACTAGTGGACTTGATAGTGCCTCAGCTTTTTATGTGATCCATGCTCTTAGTAACATATCTCTTAATGGAAAGATAGTCATATGTTCCATTCACCAGCCCACTAGTGAAATTTTTAATCTGTTTGATGATTTGCTTTTGCTCTCAAGCGGGGAAATTGTTTATTTTGGAGAAGCAAAGACGACTCTAAAGTTTTTTTCTGATGCAGGGTTCCCCTGTCCTATTCGAAGAAATCCTTCAGATCACTTTCTTCTGTGTATTAATTTGGACTTTGACTTGATTACTGCAACACTAGCAAGAACGCAGTTAAGTCTGTCAACACCATCAAATCCAGCAGTAGTAATGAGAACAGCAGAAATTCGAGGGACACTCATTGAGAGTTACAAAAGCTCAGAGCTAATGATCAATGCAAGAAGAAGAATTCAACATCTGAAACCCAATCGTGCACTCTCTTCGACCCTGGCAGAATTCAATGGCAAGGTAGAAGATGAGAGTGACTTAGAGAGCCTTATTGACCTGCAGTTTGGTGCATTGCAAAAGGCATTGAAGATACCACACAAGGCTTCAGAAGCAAGGTTGATGGTAACAAAGAAGTTCCTCACTCTATTCAGGACTGGTAAATTAGGACCTTTCATTCTTGATGATGTCCCCCATGTCACCCATGTATCATAA 1185 0.4118 MVMLWEDLTVQHPSFGANKKKLLNGVTGFAEPGRIMAVMGPSGSGKTTLLDSLAGRLSANVVMTGNILINGKERSLYCREVSYIAQEELFLGTLTVKETLTYSANMRLPSKMTKEEINKVVEETIMKMGLEECANNKIGNWHSRGISNGEKKRLSIGLEVLTQPHVLLLDEPTSGLDSASAFYVIHALSNISLNGKIVICSIHQPTSEIFNLFDDLLLLSSGEIVYFGEAKTTLKFFSDAGFPCPIRRNPSDHFLLCINLDFDLITATLARTQLSLSTPSNPAVVMRTAEIRGTLIESYKSSELMINARRRIQHLKPNRALSSTLAEFNGKVEDESDLESLIDLQFGALQKALKIPHKASEARLMVTKKFLTLFRTGKLGPFILDDVPHVTHVS* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02800 394 Pfam ABC-2 type transporter 203 255 IPR043926 GO:0140359
Rops8g02800 394 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 3 246 IPR003439 GO:0005524
Rops8g02800 394 Pfam ABC transporter 24 174 IPR003439 GO:0005524
Rops8g02800 394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 238 IPR027417 -
Rops8g02800 394 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 2 318 - -
Rops8g02800 394 SMART AAA_5 32 231 IPR003593 GO:0016887
Rops8g02800 394 Gene3D - 5 240 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02800 Rops-Chr8 63086330 63093245 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02800 30 204 Calmodulin-binding Proteins AT2G36910 27.473 3.74e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02800 K05681 - gmx:100787198 488.419