Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02757 ATGGTATCGAATTCCTGCAAGTCATGCGGAGGTGCAATGGTTATCAAAAGCAGCAAAGGCGGTCATGATTTCCTCACCCGGTTTGGCTTGCAAGTGGACACGAAGCTGGCCAACAAATCGTATGAATGGATCAGGTTCAGACCTCAACTCAAGACTGGACAAACAGCTTCTCGTAGTAGGGTGTTTGAGGGAAATGGGAAGACTTCTTCGAGCCACCAGGAGAACCGAATACTAGGGGTGGCAAGAGATCCTCTTGGTTGGAAGGAAAAGACAAGGAAATCTGAAAATGTTACGGTTTCTTCTCACCAAAATTTACTTGCTACGGGTTCTTATAAAAACCTGAAGGATATAGATAAGTTGTTCTCGGTGATTACTGAAGTTGACAGAGGATTGATTGGAGAAAATAAAGCCCGCTTCTGTGTTGCCATAGACTCGCTAAGCGAACTGATGAGACATGCATCTTTGCAGTCGGTTGCTGGCCTTCTAAGCAATCTGCGTAGCCATGATCAAATTTCAAGTATTTTTGGGCTATTGCATTCTGACCTTCACGAGGAGAGGGCTGCAGCTGTTCTCGAGTACATGTCCTCCATTGTGGCCAGTGTAGAACCATTTCATCATTCTGCTGATAGTCCATATGCTGGAGGTGTATTTCTAGCTACCATCCATTTCCCTCCTGATTATCCTTTCAAGCCCCCTAAGGTTGCGTTTAGGACTAAGGTCTTTCACCCAAATATCAATAGCAATGGTAGCATTTGTCTTGATACCCTGAAGGAACAGTGGAGTCCTGCTCTTACCATCTCTAAGGTACTACTTTCTATCTGCTCACTGCTGACTGATCCAAACCCGGATGACCCACTTGTACCTGAGTTTGCTCACATGTACAAAAGTGACCGAGCTAAGTATGAGGCCACTGCACGCAGCTGGGAAGGCGGTGGCTATTTGTCATTGGAAGACTCTCGAGGTTCTGCCAAAACAATATTCTTGGAAGAAGGTTTTCTTGACTTTTTGAACAAGGAGCTTCAATCATATCATTATGATAAAAATGAATATGAAGGTGCGGGGAAGCTTAAAACGTCAGATTTTCTGTTGACTCCAAGGTACCGAGTTTCTGTCAGGGCGATGACACCAGGCGTACCTCTATTTCTGTTAAACTATGCTGCCCAGCTGCATGGCATTTTTGAGGCCGCAAGTTTTGGAGATGCAGTCCTTGCCAACCTTGCACCCGAAGTGTCTTCAAGAGCAGTAAACAAGTCCACCATAGCAGAACTTGTGAGGCTCTATAAAGGGTCTGACCGCGGGATGAGGATTCCAGCTTATGATGGCAGAAAAAGTCTGTACACTGCAGGGACACTTCCCGTTTCCTGGAGAGAGTTTAAGATCAAGTTTGTTGCACGTGCAAACTTGTATCACTTGGGGCAGCTCCTAGCTGGAGCCGATTCTCGGATAGATGGGAAGGTGTACCATAGTCACAATGGACCGGCACCACATTTTCACGAACCCATATGCTCTCCCGGCTTCTGCGGCAGAAGAGCTCCACCCCTTCGCAACAGAAATTTCAATGAGAAAGCTTTTACTGTTGGCATTGGTGGGCCTGTGGGTACTGGGAAAACTACTTTGATGTTGGCCCTTTGTAAGTGTTTGCGAGATAAGTATAGTCTCACAGCTGTGACAAATGATATATTCATAAAAGAAGATGGTGAGTTCTTGGTGAAACACAAAGCACTTCCAAAGGAAAGGGTACGCGCTGTAGAAACTGGAGGCAGCCTCACATGCATTTGGGTCTACCTTGGAAGGGCCTTCCCAAGACCATCCGAGGCACCATTTACGTTCGGGTAG 1836 0.4624 MVSNSCKSCGGAMVIKSSKGGHDFLTRFGLQVDTKLANKSYEWIRFRPQLKTGQTASRSRVFEGNGKTSSSHQENRILGVARDPLGWKEKTRKSENVTVSSHQNLLATGSYKNLKDIDKLFSVITEVDRGLIGENKARFCVAIDSLSELMRHASLQSVAGLLSNLRSHDQISSIFGLLHSDLHEERAAAVLEYMSSIVASVEPFHHSADSPYAGGVFLATIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDTLKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEFAHMYKSDRAKYEATARSWEGGGYLSLEDSRGSAKTIFLEEGFLDFLNKELQSYHYDKNEYEGAGKLKTSDFLLTPRYRVSVRAMTPGVPLFLLNYAAQLHGIFEAASFGDAVLANLAPEVSSRAVNKSTIAELVRLYKGSDRGMRIPAYDGRKSLYTAGTLPVSWREFKIKFVARANLYHLGQLLAGADSRIDGKVYHSHNGPAPHFHEPICSPGFCGRRAPPLRNRNFNEKAFTVGIGGPVGTGKTTLMLALCKCLRDKYSLTAVTNDIFIKEDGEFLVKHKALPKERVRAVETGGSLTCIWVYLGRAFPRPSEAPFTFG* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02757 611 FunFam Ubiquitin-conjugating enzyme E2 D2 190 313 - -
Rops8g02757 611 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 241 256 IPR023313 -
Rops8g02757 611 Pfam Ubiquitin-conjugating enzyme 207 307 IPR000608 -
Rops8g02757 611 CDD Elp5 133 201 - -
Rops8g02757 611 Gene3D Ubiquitin Conjugating Enzyme 199 311 IPR016135 -
Rops8g02757 611 PANTHER UREASE ACCESSORY PROTEIN G 482 588 IPR004400 GO:0003924|GO:0006807|GO:0016151
Rops8g02757 611 CDD UBCc 208 308 IPR000608 -
Rops8g02757 611 Pfam CobW/HypB/UreG, nucleotide-binding domain 526 587 IPR003495 -
Rops8g02757 611 Gene3D - 521 598 IPR027417 -
Rops8g02757 611 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 153 314 IPR000608 -
Rops8g02757 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 524 596 IPR027417 -
Rops8g02757 611 SMART ubc_7 169 314 - -
Rops8g02757 611 Pfam Elongator subunit Iki1 135 209 IPR019519 GO:0002098|GO:0033588
Rops8g02757 611 SUPERFAMILY UBC-like 207 309 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02757 Rops-Chr8 62289526 62293702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02757 404 477 Eukaryotic Initiation Factors Gene Family AT5G43810 53.608 2.93e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02757 K06689 K11376 gmx:100794562 215.698