Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02748 ATGAACACAAAGCCCTCTCATGGTCCCATTCATTTTCGTGCCCCTTCCAAGATCTTCTGGCGCACCGTTCGTGGAATGATTCCACATAAGACTAAGCGTGGGGAAGCTGCTCTTGCTCGATTGAAGGTTTATGAGGGTATCAGGGGCACGAGCATCAGGGGCACGATTGGGCGTGGTGCAAAGGCTGGTGGTACGGGTAGGGTTAATTCAGGGGCACGAGCATCAACTACGGGAAAGAAAGGCAATGTTTCTGGAAAGTCTAGCAAGACAGAATACGGTGTAGTTTCGATTTCCGTGAAGCATTACATTTGGACAACATTTTACGCATCATATATTGTTTTTCTAAGGATAATTTGGTCCCGATCTGAATTGGCTGCAATGCTTGAAAGAGATGTGTTGGAAACCTCTCACGGAGTGCGATGGGATGACGTTGCGTGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGGTATTGTGCTTCTTATGGATGCTGAATATTTCCAGGTAATCTTGAACAATTTTCTTGCTGAATTTTCATAA 540 0.4519 MNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGEAALARLKVYEGIRGTSIRGTIGRGAKAGGTGRVNSGARASTTGKKGNVSGKSSKTEYGVVSISVKHYIWTTFYASYIVFLRIIWSRSELAAMLERDVLETSHGVRWDDVAWLTEAKRLLEEGIVLLMDAEYFQVILNNFLAEFS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02748 179 PANTHER RIBOSOMAL PROTEIN L13 1 47 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops8g02748 179 ProSitePatterns Ribosomal protein L13 signature. 23 46 IPR023563 GO:0003735|GO:0005840|GO:0006412
Rops8g02748 179 SUPERFAMILY Ribosomal protein L13 1 48 IPR036899 GO:0003735|GO:0005840|GO:0006412
Rops8g02748 179 MobiDBLite consensus disorder prediction 69 88 - -
Rops8g02748 179 Gene3D Ribosomal protein L13 1 54 IPR036899 GO:0003735|GO:0005840|GO:0006412
Rops8g02748 179 Pfam Ribosomal protein L13 4 47 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops8g02748 179 MobiDBLite consensus disorder prediction 58 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02748 Rops-Chr8 62093510 62094525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02748 1 47 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 95.745 4.81e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02748 K02872 - gmx:100813340 98.2117