Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02740 ATGCTTGCAGTCTCCCCACCAGTGTTCTCATACTCAAACATGGGGTGGCTCTTAGAAGAGGAACCCTTAATCCATAAACAGAACTATTTTTATAAAGATAGTGTGTCCTCAGAGTCATTTCCATATGAATTCTCTTCACCACAGCAACAGGTTGAGGTTGAAAGATCTACTGCACCATCCCCTGATCTTACCACGGTCAAGAAGCTTAACCACAATGCCAGTGAACGTGATCGCCGCAAGAAGATTAATAGCTTGATCACTTCACTTCGTTCACTTCTTCCTGAGGCAGATCAAACGAAAAAAATGAGCATTCCTGTAACAATTTCGCGGGTCTTAAAATACATACCTGAGTTACAAAAGCAGGTGGAAGGACTAATTAAGAAGAAAGAGGAGCTTCTATCGAGAATTTCTCGCCAAGGAGATTCAGTGAACAAAGAATCTAAAAGGAAGGTTCCCTGTCACAACTCTGCTTTTGTAGTTTCAACAAGTAGACTCAGTGATAGTGAGGCTTCTATTCAAATTTCCTCTGCCGAGATCCACAAGACGCAGTTATCTGAGATCTTGGTGTGTTTAGAAAATAACGGGTTTTTTCTGCTAAATGCTTCTTCCTCCGAAACCTTTGGAGGGAGGGTATTCTACAACTTGCATTTTCAGGTGGAAAAAACATACAGATTAGAGTCCGATATTCTAACTCAGAAGCTTTGGTCGATGTATGAGAAGAAGCAAAGGATTTTCTAA 738 0.4092 MLAVSPPVFSYSNMGWLLEEEPLIHKQNYFYKDSVSSESFPYEFSSPQQQVEVERSTAPSPDLTTVKKLNHNASERDRRKKINSLITSLRSLLPEADQTKKMSIPVTISRVLKYIPELQKQVEGLIKKKEELLSRISRQGDSVNKESKRKVPCHNSAFVVSTSRLSDSEASIQISSAEIHKTQLSEILVCLENNGFFLLNASSSETFGGRVFYNLHFQVEKTYRLESDILTQKLWSMYEKKQRIF* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02740 245 Coils Coil 115 135 - -
Rops8g02740 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 136 IPR036638 GO:0046983
Rops8g02740 245 SMART finulus 72 124 IPR011598 GO:0046983
Rops8g02740 245 CDD bHLH_AtORG2_like 67 139 - -
Rops8g02740 245 FunFam Transcription factor ORG2 62 147 - -
Rops8g02740 245 Gene3D - 62 149 IPR036638 GO:0046983
Rops8g02740 245 Pfam Helix-loop-helix DNA-binding domain 67 119 IPR011598 GO:0046983
Rops8g02740 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 118 IPR011598 GO:0046983
Rops8g02740 245 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 55 236 - -
Rops8g02740 245 MobiDBLite consensus disorder prediction 46 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02740 Rops-Chr8 61893359 61895238 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02740 1 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 41.762 2.63e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g02740 HLH 3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02740 - - gmx:100803424 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02740 8 61893359 61895238 Rops8g02740 8 61893359 61895238 ECH