Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02722 ATGTCCCTGGAAGAGTCTCTAAGATCTCTATCACTGGATTACCTCAACCTTCTCATCAATGGCCAAGCCTTCAGTGATGTCACTTTCAGTGTTGAGGGTCGTTTGGTCCATGCTCATCGCTGCATCCTTGCAGCTAGAAGCCTCTTCTTCAGGAAATTCTTTTGTGGGCCGGACCCTCCATCTGGGTTAGACCCGACTGGAACCCGGGTTAACTCGCCCGTGACAACCAGGTCTGGAGTTATACCAGTGAACTCGGTGGGTTATGAGGTGTTCTTGCTCATGTTGCAGTTTCTCTACAGTGGCCAGGTCTCTATTGTACCTCAGAAACATGAGCCTAGGCCTAATTGTGGTGAACGAGGTTGTTGGCACACGCATTGCACCTCAGCCGTTGATCTTGCCCTTGACACACTCGCTGCCGCTAGATACTTTGGAGTTGAACAGCTCGCATTACTCACTCAGAAACAACTAGCTAGCATAGTAGAGAAGGCTTCAATAGAAGATGTAATGAAAGTGCTCTTAGCTTCAAGAAAACAAGACATGCACCAACTATGGACTACTTGTTCCCACCTCGTAGCAAAGTCTGGTCTTCCCCCAGAGGTTCTGGCAAAGCACCTCCCCATTGATATTGTAGCAAAGATTGAAGAGCTTCGTCTCAAATCCTCCCTTGCACGCCGTTCCTTAATGCCACATCATCATCACCTCCACCACCACCACCACCCTCACGATCTCGGTGCCGCGGCGGACCTAGAAGACCAGAAAATCCGGCGAATGAGGAGGGCCCTTGATTCCTCCGATGTGGAACTCGTGAAACTCATGGTAATGGGAGAAGGTCTCAACCTTGATGAAGCATTGGCCTTACCCTACGCAGTCGAGAATTGCAGCAGAGAAGTGGTGAAAGCCTTGCTTGAACTTGGTGCAGCAGATGTTAACTACCCAGTTGGTCCCTCCGGCAAAACGCCGCTCCACATTGCTGCAGAAATGGTCTCGCCGGACATGGTGGCGGTGCTGCTCGACCACCATGCTGACCCAAATGTCCGTACAGTAGATGGTGTCACTCCTTTGGATATCCTAAGAACCCTAACCTCAGATTTCCTCTTCAAAGGTGCTGTCCCTGGACTAACCCATATTGAACCCAACAAGCTAAGGTTGTGTTTGGAGCTTGTTCAATCTGCAGCTCTTGTTATGTCACGTGAAGAAGGGAATGCTAACAACCATGCTCCTTCTTCTGCTTCTCCTATATACCCTCCTCCCATGAATGAAGACCATAATAGCAGTGGCAACCATCACAACAACAACGTTGGTAACCTCAACTTGGATTCAAGGTTGGTGTATCTTAACCTTGGTGCTGCTCAAATGAGTTCGAGGTTGGATGCTGGTGATGATGATAGTAGCCACAGGGAAGCCATGAACCCAACCATGTACCATCACTCACATGACTTCTAG 1443 0.4927 MSLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPTGTRVNSPVTTRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASIVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSSLARRSLMPHHHHLHHHHHPHDLGAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPVGPSGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNANNHAPSSASPIYPPPMNEDHNSSGNHHNNNVGNLNLDSRLVYLNLGAAQMSSRLDAGDDDSSHREAMNPTMYHHSHDF* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02722 480 SUPERFAMILY POZ domain 9 158 IPR011333 -
Rops8g02722 480 CDD BTB_POZ_NPR_plant 8 160 - -
Rops8g02722 480 ProSiteProfiles Ankyrin repeat profile. 316 348 IPR002110 GO:0005515
Rops8g02722 480 ProSiteProfiles Ankyrin repeat region circular profile. 316 346 - -
Rops8g02722 480 FunFam regulatory protein NPR5 isoform X2 247 364 - -
Rops8g02722 480 SMART BTB_4 25 160 IPR000210 GO:0005515
Rops8g02722 480 MobiDBLite consensus disorder prediction 418 433 - -
Rops8g02722 480 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 476 IPR044284 GO:0099402
Rops8g02722 480 SMART ANK_2a 281 311 IPR002110 GO:0005515
Rops8g02722 480 SMART ANK_2a 316 345 IPR002110 GO:0005515
Rops8g02722 480 Pfam Ankyrin repeats (3 copies) 264 346 IPR002110 GO:0005515
Rops8g02722 480 FunFam regulatory protein NPR5 isoform X1 4 193 - -
Rops8g02722 480 Gene3D - 247 364 IPR036770 -
Rops8g02722 480 MobiDBLite consensus disorder prediction 455 480 - -
Rops8g02722 480 Pfam BTB/POZ domain 16 110 IPR000210 GO:0005515
Rops8g02722 480 SUPERFAMILY Ankyrin repeat 275 359 IPR036770 -
Rops8g02722 480 MobiDBLite consensus disorder prediction 458 480 - -
Rops8g02722 480 Gene3D Potassium Channel Kv1.1; Chain A 3 193 IPR011333 -
Rops8g02722 480 MobiDBLite consensus disorder prediction 399 433 - -
Rops8g02722 480 Pfam Domain of unknown function (DUF3420) 195 258 IPR024228 -
Rops8g02722 480 ProSiteProfiles BTB domain profile. 25 107 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02722 Rops-Chr8 61506680 61510233 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops8g02722 BTB 1.2e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02722 K14508 - gmx:100816086 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02722 8 61506680 61510233 Rops8g02722 8 61506680 61510233 ECH