Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02712 ATGGATGAAGTTAATGCATACGACCCTATTCGCGTTGCTGTGGTCGTGGAATCTGTATTATTTGAGAAGTGGGGTCCATCAAATGGGGCCCAAAAGGTCAAGTATAGGTCTTTAATGTATAACCTTAAGGATCCAAATAATCCAGATTTCCGGAGAAAAGCGCTACTTGGTATCGTTGGGCCACAGCGGCTGATCAACATGAGCGCATCGGGAATGGCTAGTGAGCAAAGGCTTGCTAACTCATGTTGCTTCTGGGCTCTAAGGTACACTGCGAGTTTGGAAAATGGAAGTCTTGTGATATGTAAGAGATCAACGGCTTCTGCAGCAGGTGGTTCCCTCACCCACGTCGTTGATCATGTGGATTTGGAGCCATGA 375 0.4667 MDEVNAYDPIRVAVVVESVLFEKWGPSNGAQKVKYRSLMYNLKDPNNPDFRRKALLGIVGPQRLINMSASGMASEQRLANSCCFWALRYTASLENGSLVICKRSTASAAGGSLTHVVDHVDLEP* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02712 124 SMART mid_6 1 81 IPR003618 GO:0006351
Rops8g02712 124 ProSiteProfiles TFIIS central domain profile. 1 75 IPR003618 GO:0006351
Rops8g02712 124 SUPERFAMILY Elongation factor TFIIS domain 2 7 75 IPR036575 GO:0006351
Rops8g02712 124 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 5 76 - -
Rops8g02712 124 Gene3D - 1 75 IPR036575 GO:0006351
Rops8g02712 124 Pfam Transcription factor S-II (TFIIS), central domain 5 77 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02712 Rops-Chr8 61326251 61326625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02712 84 123 Homeobox Transcription Factor Family AT1G30490 38.235 1.16e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02712 K03145 - gmx:100811982 126.716