Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02710 ATGGGTAGTAGAAGTAGAACTGTAAACGTTAACACTGAGGACTCTAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCTAGTTCCATGGGCATAGAAGCAACTAATGTTCATCCTTCACGGATCTCTGAATTTGGAACCCTTGAACAATCTCTTGGATTTCGTGTCGATGATACCATCAATCTTAGCAGAAATCCAGTGTTTAATCAAATGAAATCAAATAGCCAAGCTTTAGGCGCCGATATTCAATTTGGTGCTTTAAGTAAGTCAATTGCAACCTCGGATATAAACCTCTCTGCTGCAATTGCTGGGTCTCAGATAATGCCGTTACAGAAAGACTCGCAACCAAATCTGGCTTTGACTTCTGCTGGTCATCGTGAGAACTGGGGAGAGTCCAACATGGCTGATGGGAGCCCTAGGACTGATACTTCAACCGATGATACAGATGATAAAAATCAAAGGCTTGAAAGGGGTGAATGCAGTGAGAGATCAAAAGATAAATCAGATCAAAAGACATTAAGACGGCTAGCTCAAAATCGTGAGGCTGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGTAGTCGGCTGAAATTGACCCAACTGGAGCAAGAGCTCCAGCGAGCTCGCCAGCAGGGAATATTTATTTCAAGCACCGGAGATCAGGCCCATTCAATGAGTGGAAATGGCGCCATGGCATTTGATGTAGAATATGCACGATGGTTAGAAGAGCATAATAGGCACACCAATGAGCTAAGGGCTGCAGTAAATTCTCATGCAGGAGATATTGAACTTCGTACCATCGTCGACAATTTCATGACACAATTTGATGATATCTTTAGGTTGAAAGGTATCGCAGCAAAAGCTGATGTTTTCCACATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGATGTTTCATGTGGATTGGAGGCTTTCGCTCATCCGAACTTCTCAAGCTTCTTGTAAGTCAATTGGAGCCGTTAACTGAGCAACAATTGATGGGCATATACAACTTACAACAGTCATCCCAACAGGCTGAAGATGCTCTATCCCAAGGAATGGATGCATTGCAACAATCATTGTCTGAGACATTGGCTAATGGTTCACCCAACCCTTCAGGCTCTTCAGGAAACGTGGCAAACTATATGGGGCAAATGGCTATGGCCATGGGAAAGCTCGGTACTCTTGAGGGGTTCCTTCGCCAGGCTGATAATCTGCGGCAGCAAACATTACAACAAATGCTTCGGATATTAACAACCCGGCAATCAGCTCGAGCTCTTCTCGCAATAAGTGATTACTTCTCCCGGCTGCGTGCCCTGAGTTCTCTATGGCTCGCCAGGCCAAGGGAGTGA 1389 0.4507 MGSRSRTVNVNTEDSNKVVNGMPSYAPPLPSSSSSMGIEATNVHPSRISEFGTLEQSLGFRVDDTINLSRNPVFNQMKSNSQALGADIQFGALSKSIATSDINLSAAIAGSQIMPLQKDSQPNLALTSAGHRENWGESNMADGSPRTDTSTDDTDDKNQRLERGECSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAHSMSGNGAMAFDVEYARWLEEHNRHTNELRAAVNSHAGDIELRTIVDNFMTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02710 462 Pfam Seed dormancy control 259 335 IPR025422 GO:0006351|GO:0043565
Rops8g02710 462 SUPERFAMILY Leucine zipper domain 177 220 IPR046347 GO:0003700|GO:0006355
Rops8g02710 462 MobiDBLite consensus disorder prediction 132 147 - -
Rops8g02710 462 MobiDBLite consensus disorder prediction 132 179 - -
Rops8g02710 462 MobiDBLite consensus disorder prediction 1 22 - -
Rops8g02710 462 PANTHER TRANSCRIPTION FACTOR TGA9 131 462 - -
Rops8g02710 462 SMART brlzneu 173 236 IPR004827 GO:0003700|GO:0006355
Rops8g02710 462 Pfam Basic region leucine zipper 173 219 IPR004827 GO:0003700|GO:0006355
Rops8g02710 462 MobiDBLite consensus disorder prediction 1 19 - -
Rops8g02710 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 175 219 IPR004827 GO:0003700|GO:0006355
Rops8g02710 462 CDD bZIP_HBP1b-like 177 229 - -
Rops8g02710 462 MobiDBLite consensus disorder prediction 148 179 - -
Rops8g02710 462 Coils Coil 196 223 - -
Rops8g02710 462 ProSiteProfiles DOG1 domain profile. 242 459 IPR025422 GO:0006351|GO:0043565
Rops8g02710 462 FunFam BZIP family transcription factor 176 225 - -
Rops8g02710 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 180 195 IPR004827 GO:0003700|GO:0006355
Rops8g02710 462 Gene3D - 176 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02710 Rops-Chr8 61239431 61246964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02710 140 462 bZIP Transcription Factor Family AT3G12250 74.924 1.61e-173 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops8g02710 DOG1 6.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02710 K14431 - gmx:100780071 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02710 8 61239431 61246964 Rops8g02710 8 61239431 61246964 ECH