Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02693 ATGGAGAACTCTGAGCTCTTCCAATTCCTCGCCAGCAACAACCCCTCCTTCTTCGACTCCACCATGATGCACCACAGCTTCTGTAGTTCCTCTAATTATTACCCCTCAGAAGTGTCTGAAATTACAGATGCACCCTCCCAGCAAGATAGGGCCTTAGCAGCTATGAAGAATCACAAGGAAGCTGAGAAAAGGAGAAGGGAGAGAATCAATTCCCACCTTGACCAACTTCGCACTCTTCTTCCTTGTAATTCCAAGACAGACAAGGCTTCACTTCTTGCAAAGGTTGTCCAAAGAGTGAAAGAGTTGAAACAGCAAACTTCAGAGATCACTGAACTGGAAACAGTTCCATCGGAGACCGACGAGATCACCGTCCGTTCCACCGGAGGTGACCACTCCGGCAGGCTGATATTCAAGGCCTCTTTATGCTGTGAGGACCGTTCAGACCTCATCCCTGACCTCATAGAAATCCTCAAGTCCCTTCATCTGAAAACCCTGAAAGCAGAAATGGCCACACTTGGAGGAAGAACACGCAACGTTCTTGTAGTTGCTGCAGATAAAGACCACAGCATTGAATCAATCCATTTCCTTCAGAACTCGCTCAAGTCTTTGTTAGACAGATCCAATTCTAGTGAAAGATCAAAAAGACGCCGTGGGTTAGATCGAAGAATGATGGCTTAA 678 0.4661 MENSELFQFLASNNPSFFDSTMMHHSFCSSSNYYPSEVSEITDAPSQQDRALAAMKNHKEAEKRRRERINSHLDQLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVRSTGGDHSGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMATLGGRTRNVLVVAADKDHSIESIHFLQNSLKSLLDRSNSSERSKRRRGLDRRMMA* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02693 225 MobiDBLite consensus disorder prediction 207 225 - -
Rops8g02693 225 MobiDBLite consensus disorder prediction 206 225 - -
Rops8g02693 225 FunFam transcription factor bHLH30 48 111 - -
Rops8g02693 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 113 IPR036638 GO:0046983
Rops8g02693 225 SMART finulus 59 108 IPR011598 GO:0046983
Rops8g02693 225 Gene3D - 48 114 IPR036638 GO:0046983
Rops8g02693 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Rops8g02693 225 CDD bHLH_AtAIG1_like 48 124 - -
Rops8g02693 225 Pfam Helix-loop-helix DNA-binding domain 57 102 IPR011598 GO:0046983
Rops8g02693 225 PANTHER TRANSCRIPTION FACTOR BHLH30 35 218 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02693 Rops-Chr8 60977702 60979343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02693 6 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 61.712 1.98e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g02693 HLH 5.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02693 - - gmx:100802566 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02693 8 60977702 60979343 Rops8g02693 8 60977702 60979343 ECH