Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02687 ATGGATTGTGAAGAAGAAGAACAACAACAACAGCAAGGTTCTCAGTCAGAGACATACCTAATGGGCTTCGTGGTGACCGACATCTACGGTCTGAATAACTACTCCGCCACCATCACTGGCCGTCAAACGTTGGGTCTGGTCCGTGAACCCTTAAACCCAATTGACCCTAACACCATCAAAGTCCTCAATACCCAAACCATCCAGGTGGGCCACATCGAACCCCCCGTCGCCGCCTTCCTCTCTCCTCTCATCGACGCCCAACTCATCACCGTCGAAGCTATTATCCCAAACTCGGTTTTCTTCACCAACAAATTCCGAATCGAATGCCAAGTTCATGTCTTTGCTCATACTTCTAACTTCTCAGTCGTCAAAGACGCTTTCTCCCAATCCCCTTTGCATTTCATTACCCACTCCGACCCCAAATTCAGACTCTCTGATTCCCTTGCCGTCAAACAAAGCCGTGTCGCCAAGAATTTGAATAACTTGGATGTCATCTTCAAACTCATGGGTGACAATCTCGCTAAGAAGAGTGTTCGTCAACCAATTCAACCTCCTTCGAATGTAATCAAATCGGAGCTTCTTCCACACCAGAAGGAAGCCCTTGCTTGGCTCCTTCATCGCGAGAATTCTGAGGAGTTGCCACCGTTTTGGGAACAGAGAGATGATTCTATATTCGTCAATGTGCTGACCGGTTACCAAACTGATGTAAGACCTGAGCCTTTGCGTGGTGGGATCTTCGCTGATGATATAGGGTTGGGAAAGACCTTAACTTTGATCTCTTTGATAGCTTTTGATAGATGGGAAAATATGGGCAACAAGAAAAAACGGAGTAGGAGTGATCTTGATGAGGATTCTCCTGATATGGAATCAAAGGCTACCTTAGTAGTGTGTACCCCTTCGGTTATTTCCACATGGGTGACCCAATTAAAGGAACACACATTCCCTTGGGCATTGAAGATATACATGTTTTATGGGGATAGAAGGACCAGGGATGTTGAGGAACTGAAGAATTATGATCTGGTGTTGACAACTTACTCTACTTTTGCCAAGGAATTTGATGGGCCAGGCACTGAGGTGAGGAAATTAGAATGGCGGAGAATCATATTGGATGAAGCGCATATGATCAAGAGCTTATATGCTGCACAAAGTCTAGCAGTAACCGCAGTTAAGGCTAAGAGGAGGTGGGCTGTTACAGGGACACCCTATCAAAACGGGTCCTGTGATTTGTTATATCTTATGGCATTTTTGCACTTTGAACCCTTTTCTATATGGAGCTATTGGCAAAGCTTGGTTCAACGTCCTCTTTGTCTTAACAACGAGAGTGGCCTTATGCGCTTGAAGGTTTTGATGGCAGCAATATCATTACGAAGAACAAAAGACATGGCATTGGTGGAGCTGCCACAAAAAACAGTACAGACTCATTATGTTGAACTTTCCTTGGAAGAATGTAAACTATATGATGAGGTGAAAAGGGAAGCAAAGGAGTATTTGATACGATATAAGGATCATATCCATTATTCCCCTGTACTAAGTATGATTCTAAGACTTCGACAAATATGTACTGATTTCACATTGTGCCCTTCAGATTTCAAGTCATATCTACTCCCTTCAAGTAACATTAAAGATGTTTCTAAGAAGCCTGAGTTGCTGCAAACATTAGTTAGGGTACTGCAAGATGTTGACGATTTTGACTGTCCAATTTGTATATCTCCTCCAATGGATATTGTAATTACATGCTGTGCTCACGTTTTCTGTCGAGGCTGTATTTTGAAAACTCTACAACGCAGAAATCCCCGTTGTCCTCTTTGTCGGCATTCCCTCTCAAAATCTGACTTGTTCTCAGCTCCTCCTGAATCCTTTAATGCTGACAGTGCTGAACTGTGCTCATCAGAAAAAAAGTTTTCTACCAAAGTTTCTATGCTGATCAAACTTCTTAAAGAATCGAGGGATCAACATCCAGCTGCAAAATCAGTTGTATTTTCACACTTTCGTAAGCTGTTGTTGCGGTTGGAAGAGCCTTTGAGAGCAGCTGGTTTTAAGACTTTGCGTCTTGATGGGACGATGAATGCTAAACATAGGGCTCATGTCATTGAGCAATTTCAAGTCTCAGGAAAGGATGGATCGATGGTTCTGCTTGCAAGCCTCAGGGCTTCAAGTGCAGGTATAAATCTTACAGCTGCCTCTAGAGTGTACTTAATGGAGCCATGGTGGAATCCAGGAGTTGAGGAACAAGCAGTGGAACGGGTCCACCGCATTGGACAGAAAGAGGCTGTGAAGGTGTTTAGGTTGATTGCTAAAAACAGCATTGAAGAGAAAATATTAATGTTGCAGGAGAAAAAGAAAGTAATAGCAATGGTAGTATCTAGGAGTAGATCAAAGGATGCTGTAGGCTTGGACTTTGGAATGCTAGACATAAATGATCTACGATTCGTTTTGGAAGAGTAG 2445 0.4319 MDCEEEEQQQQQGSQSETYLMGFVVTDIYGLNNYSATITGRQTLGLVREPLNPIDPNTIKVLNTQTIQVGHIEPPVAAFLSPLIDAQLITVEAIIPNSVFFTNKFRIECQVHVFAHTSNFSVVKDAFSQSPLHFITHSDPKFRLSDSLAVKQSRVAKNLNNLDVIFKLMGDNLAKKSVRQPIQPPSNVIKSELLPHQKEALAWLLHRENSEELPPFWEQRDDSIFVNVLTGYQTDVRPEPLRGGIFADDIGLGKTLTLISLIAFDRWENMGNKKKRSRSDLDEDSPDMESKATLVVCTPSVISTWVTQLKEHTFPWALKIYMFYGDRRTRDVEELKNYDLVLTTYSTFAKEFDGPGTEVRKLEWRRIILDEAHMIKSLYAAQSLAVTAVKAKRRWAVTGTPYQNGSCDLLYLMAFLHFEPFSIWSYWQSLVQRPLCLNNESGLMRLKVLMAAISLRRTKDMALVELPQKTVQTHYVELSLEECKLYDEVKREAKEYLIRYKDHIHYSPVLSMILRLRQICTDFTLCPSDFKSYLLPSSNIKDVSKKPELLQTLVRVLQDVDDFDCPICISPPMDIVITCCAHVFCRGCILKTLQRRNPRCPLCRHSLSKSDLFSAPPESFNADSAELCSSEKKFSTKVSMLIKLLKESRDQHPAAKSVVFSHFRKLLLRLEEPLRAAGFKTLRLDGTMNAKHRAHVIEQFQVSGKDGSMVLLASLRASSAGINLTAASRVYLMEPWWNPGVEEQAVERVHRIGQKEAVKVFRLIAKNSIEEKILMLQEKKKVIAMVVSRSRSKDAVGLDFGMLDINDLRFVLEE* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02687 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 549 619 IPR013083 -
Rops8g02687 814 CDD SF2_C_SNF 635 764 - -
Rops8g02687 814 Pfam SNF2-related domain 196 522 IPR000330 GO:0005524|GO:0140658
Rops8g02687 814 SUPERFAMILY RING/U-box 561 613 - -
Rops8g02687 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 458 812 IPR027417 -
Rops8g02687 814 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 235 419 IPR014001 -
Rops8g02687 814 ProSitePatterns Zinc finger RING-type signature. 580 589 IPR017907 -
Rops8g02687 814 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 168 810 - -
Rops8g02687 814 Gene3D - 232 458 IPR038718 -
Rops8g02687 814 SMART ring_2 565 603 IPR001841 -
Rops8g02687 814 Pfam HIRAN domain 22 97 IPR014905 GO:0003676|GO:0008270|GO:0016818
Rops8g02687 814 Pfam Helicase conserved C-terminal domain 637 753 IPR001650 -
Rops8g02687 814 Gene3D - 467 800 IPR027417 -
Rops8g02687 814 Gene3D - 12 133 - -
Rops8g02687 814 ProSiteProfiles Zinc finger RING-type profile. 565 604 IPR001841 -
Rops8g02687 814 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 637 791 IPR001650 -
Rops8g02687 814 SMART helicmild6 668 753 IPR001650 -
Rops8g02687 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 452 IPR027417 -
Rops8g02687 814 SMART HIRAN_2 21 115 IPR014905 GO:0003676|GO:0008270|GO:0016818
Rops8g02687 814 Pfam Zinc finger, C3HC4 type (RING finger) 565 603 IPR018957 GO:0046872
Rops8g02687 814 CDD RING-HC_HLTF 561 612 - -
Rops8g02687 814 SMART ultradead3 189 433 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02687 Rops-Chr8 60860433 60863785 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02687 5 793 RAD5 or RAD16-like Gene Family AT5G05130 54.776 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops8g02687 SNF2_N 1.8e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02687 K15711 - fve:101311093 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02687 8 60860433 60863785 Rops8g02687 8 60860433 60863785 ECH