Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02686 ATGGATTCTGAAGAAGAAGAGCAACAAGTTTCACAGTCAGAGACATACCTAATGGGCTTCGTAATAGCCAACATTGTTGGTCTCAAATACTACTCCGGCACCATCAGCGGCCGCGAAATGGTGGGTCTCATCCGTGAACCCTTAAACCCATATGACCCAAACGCCATCAAAGTCCTCAACACCCGAACCATCCAAGTGGGTCACTTAGAACGCTCCATCGCCGCCGTTCTTTCTCCACTCATAGACTCCGAACTCATCACCGTCGAAGGCATTGTCCCTAACCCTCGATCCAACACCGACAAATTCCGAATTCCTTGTCAGGTTCACATCTTCGCCAGTTCCTCTAACTTTTCTCTTGTTGAAGATGCTTTCTCTCAATCCCCTTCCATTCACTTCATTTCCTACTCCGACCCTTCTTTTACCCTTTCTGATTCCGTTGCTGTTAAAGAAACGTGCGCTGAGAAGAAGTTTGATACTGTTGATGCTGTCTTCAAGGTTGTTGATGAGAATCTCACTGCTGTTAGGGATAGTGTTCCCCAATCGCTACAACCTCCATTGAAAGTTATCAAATCAGAGCTTCTTCAACACCAGAAAGAAGCCCTTTCTTGGCTCTTTCACCATGAGAATTCTAGTGAGTTGCCACCGTTTTGGGAACAGCGGGATGATTCTTTATTTGTCAATGTGCTTACCAATTACCAAACTGACACAAGGCCTGAGCCTCTGCGTGGTGGGATTTTCGCTGATGATATGGGGTTGGGAAAGACTCTAACTTTGATCTCTTTGATTGCTTTTGACATGTGGGAAAATATGAAAATGACTAAGGGTAAGAAGAAACGCGGTAGAAATGTAATCAGCGATTCACAGGATATGGAGACAAATGCTACTTTGGTTGTTTGTACCCCTTCTGTGATTTCCACTTGGGTATCACAATTAGAGGAACACACTTTCCCTGGGGCATTAAAGACATACATGTATTATGGGGAAAGAAGGACCAAGAGTGTTGAGGAATTGAAGATGTATGATTTGGTGTTGACAACTTACTCTACTTTGGCCACTGAATTGCGTTGGCCGGACTTTGCTGCTAAGAAACTAGAGTGGAGGAGAGTCATTTTGGACGAAGCTCACGTGATCAAGAACATCAACGCTGGACAAAGTCAAGCAGTGATAGCACTCAATGCTAAGAGGAGGTGGGCTGTTACAGGGACACCTATTCAAAATGGGTCTTTTGATTTGTTTTCACTTATGGCATTTCTGCACTTTGAACCCTTTTCAATAAAGAACTATTGGCAAAGCTTGGTGCAACGCCCTCTTAACCAGGGCAAGGAGAGAGGCCTCATGCGCTTGCAGGTTTTGATGGCAGCAATATCATTACGAAGAACAAAAGACACGGCATTGGCGGGACTTCCACCAAAAACCATACAGACTTATTATGTTGACCTATCTTTGGAAGAACGTAAACTATATGATGAGGTGAAAGAGGAAGTAGAGGCGCTCTTGAGGCATTATAATGATTACAGTTACTCTGCTGTACTAAGTATGATTCTAAGACTTCGCCAGATATGTACTGATTTCACATTGTGTCCTTCAGATTTCAAGTCATGTCTACTTCGTTCAAGTGATATTGGAGGTGATAGTGTCCTGTGA 1644 0.438 MDSEEEEQQVSQSETYLMGFVIANIVGLKYYSGTISGREMVGLIREPLNPYDPNAIKVLNTRTIQVGHLERSIAAVLSPLIDSELITVEGIVPNPRSNTDKFRIPCQVHIFASSSNFSLVEDAFSQSPSIHFISYSDPSFTLSDSVAVKETCAEKKFDTVDAVFKVVDENLTAVRDSVPQSLQPPLKVIKSELLQHQKEALSWLFHHENSSELPPFWEQRDDSLFVNVLTNYQTDTRPEPLRGGIFADDMGLGKTLTLISLIAFDMWENMKMTKGKKKRGRNVISDSQDMETNATLVVCTPSVISTWVSQLEEHTFPGALKTYMYYGERRTKSVEELKMYDLVLTTYSTLATELRWPDFAAKKLEWRRVILDEAHVIKNINAGQSQAVIALNAKRRWAVTGTPIQNGSFDLFSLMAFLHFEPFSIKNYWQSLVQRPLNQGKERGLMRLQVLMAAISLRRTKDTALAGLPPKTIQTYYVDLSLEERKLYDEVKEEVEALLRHYNDYSYSAVLSMILRLRQICTDFTLCPSDFKSCLLRSSDIGGDSVL* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02686 547 Gene3D - 9 128 - -
Rops8g02686 547 Pfam SNF2-related domain 196 523 IPR000330 GO:0005524|GO:0140658
Rops8g02686 547 Gene3D - 226 460 IPR038718 -
Rops8g02686 547 Pfam HIRAN domain 19 113 IPR014905 GO:0003676|GO:0008270|GO:0016818
Rops8g02686 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 456 IPR027417 -
Rops8g02686 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 526 IPR027417 -
Rops8g02686 547 SMART HIRAN_2 18 114 IPR014905 GO:0003676|GO:0008270|GO:0016818
Rops8g02686 547 SMART ultradead3 189 428 IPR014001 -
Rops8g02686 547 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 235 421 IPR014001 -
Rops8g02686 547 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 155 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02686 Rops-Chr8 60852593 60853945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02686 5 533 RAD5 or RAD16-like Gene Family AT5G05130 57.319 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops8g02686 SNF2_N 2.5e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02686 K15711 - fve:101311093 654.055