Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02684 ATGGATTCTGAAGAAGAAGAGCAACAAGTTTCACAGTCAGAGACATACCTAATGGGCTTCGTAATAGCCAACATTGTTGGTCTCAAATACTACTCCGGCACCATCAGCGGCCGCGAAATGGTGGGTCTCATCCGTGAACCCTTAAACCCATATGACCCAAACGCCATCAAAGTCCTCAACACCCGAACCATCCAAGTGGGTCACTTAGAACGCTCCATCGCCGCCGTTCTTTCTCCACTCATAGACTCCGAACTCATCACCGTCGAAGGCATTGTCCCTAACCCTCGATCCAACACCGACAAATTCCGAATTCCTTGTCAGGTTCACATCTTCGCCAGTTCCTCTAACTTTTCTCTTGTTGAAGATGCTTTCTCTCAATCCCCTTCCATTCACTTCATTTCCTACTCCGACCCTTCTTTTACCCTTTCTGATTCCGTTGCTGTTAAAGAAACGTGCGCTGAGAAGAAGTTTGATACTGTTGATGCTGTCTTCAAGGTTGTTGATGAGAATCTCACTGCTGTTAGGGATAGTGTTCCCCAATCGCTACAACCTCCATTGAAAGTTATCAAATCAGAGCTTCTTCAACACCAGAAAGAAGCCCTTTCTTGGCTCTTTCACCATGAGAATTCTAGTGAGTTGCCACCGTTTTGGGAACAGCGGGATGATTCTTTATTTGTCAATGTGCTTACCAATTACCAAACTGACACAAGGCCTGAGCCTCTGCGTGGTGGGATTTTCGCTGATGATATGGGGTTGGGAAAGACTCTAACTTTGATCTCTTTGATTGCTTTTGACATGTGGGAAAATATGAAAATGACTAAGGGTAAGAAGAAACGCGGTAGAAATGTAATCAGCGATTCACAGGATATGGAGACAAATGCTACTTTGGTTGTTTGTACCCCTTCTGTGATTTCCACTTGGGTATCACAATTAGAGGAACACACTTTCCCTGGGGCATTAAAGACATACATGTATTATGGGGAAAGAAGGACCAAGAGTGTTGAGGAATTGAAGATGTATGATTTGGTGTTGACAACTTACTCTACTTTGGCCACTGAATTGCGTTGGCCGGACTTTGCTGCTAAGAAACTAGAGTGGAGGAGAGTCATTTTGGACGAAGCTCACGTGATCAAGAACATCAACGCTGGACAAAGTCAAGCAGTGATAGCACTCAATGCTAAGAGGAGGTGGGCTGTTACAGGGACACCTATTCAAAATGGGTCTTTTGATTTGTTTTCACTTATGGCATTTCTGCACTTTGAACCCTTTTCAATAAAGAACTATTGGCAAAGCTTGGTGCAACGCCCTCTTAACCAGGGCAAGGAGAGAGGCCTCATGCGCTTGCAGAACAAAAGACACGGCATTGGCGGGACTTCCACCAAAACCATACAGACTTATTATGTTGACCTATCTTTGGAAGAACGTAAACTATATGATGAGGTGAAAGAGGAAGTAGAGGCGCTCTTGAGGCATTATAATGATTACAGTTACTCTGCTGTACTAAGTATGATTCTAAGACTTCGCCAGATATGTACTGATTTCACATTGTGTCCTTCAGATTTCAAGTCATGTCTACTTCGTTCAAGTGATATTGGAGATGTTTCCAAGAACCCTGAGTTGCTGCAAGCTTTAGCTAATGTGATGCGAGATGGTGAAGATTTTGACTGCCCGATTTGTATATCTCCTCCAATGGATATTGTAATTACATGCTGTGCTCACATTTTCTGCCGAGACTGTATTTTGAAAACTCTACAACGCAGCAATCCCTGTTGTCCTCTTTGTCGGCGTTCCCTCTCAGAATCTGATTTATTTTCAGCACCTCCTGAATCCTCTAAGGTTGATACTACTGAACGGTGCTCATCAGACAAAAAGTTATCTACCAAAATTTCTATTCTGATAAAACTTCTCAAAGAATCGAGGGATCAGCATTCAGCTGTAAAATCAGTTGTATTTTCACAATTTCGTAAGCTGCTGTTGTCATTGGAAGAGCCTCTAAAAGCAGCGGGTTTCAAGACTTTGCGTCTTGATGGGACAATGAATGCTAAACATAGGGCTCATGTTATTGAGCAATTTCAAGTCTCAAAAAAGGATGAGTCGATTGTTCTGCTTGCAAGTCTAAGGGCTTCAAGTGCAGGTATAAATCTTACAGCTGCCTCTAGAGTGTACTTAATGGAGCCATGGTGGAATCCAGGAGTTGAGGAACAGGCAATGGATCGTGTCCACCGCATTGGACAGAAAGAGGCTGTGCATATAGTTAGATTGATAGCTCGAAACAGCATTGAAGAGAAGATATTAATGTTGCAGGAGAAAAAGAAAGAACTAGCGAGCAAAGGATTTAGAAGGGGATCAAAAGATACTGTTGGCTCGGGCATTGGCATGGGTATAAATGATCTACGATTCGTTTTGGAAGAGTAG 2415 0.4306 MDSEEEEQQVSQSETYLMGFVIANIVGLKYYSGTISGREMVGLIREPLNPYDPNAIKVLNTRTIQVGHLERSIAAVLSPLIDSELITVEGIVPNPRSNTDKFRIPCQVHIFASSSNFSLVEDAFSQSPSIHFISYSDPSFTLSDSVAVKETCAEKKFDTVDAVFKVVDENLTAVRDSVPQSLQPPLKVIKSELLQHQKEALSWLFHHENSSELPPFWEQRDDSLFVNVLTNYQTDTRPEPLRGGIFADDMGLGKTLTLISLIAFDMWENMKMTKGKKKRGRNVISDSQDMETNATLVVCTPSVISTWVSQLEEHTFPGALKTYMYYGERRTKSVEELKMYDLVLTTYSTLATELRWPDFAAKKLEWRRVILDEAHVIKNINAGQSQAVIALNAKRRWAVTGTPIQNGSFDLFSLMAFLHFEPFSIKNYWQSLVQRPLNQGKERGLMRLQNKRHGIGGTSTKTIQTYYVDLSLEERKLYDEVKEEVEALLRHYNDYSYSAVLSMILRLRQICTDFTLCPSDFKSCLLRSSDIGDVSKNPELLQALANVMRDGEDFDCPICISPPMDIVITCCAHIFCRDCILKTLQRSNPCCPLCRRSLSESDLFSAPPESSKVDTTERCSSDKKLSTKISILIKLLKESRDQHSAVKSVVFSQFRKLLLSLEEPLKAAGFKTLRLDGTMNAKHRAHVIEQFQVSKKDESIVLLASLRASSAGINLTAASRVYLMEPWWNPGVEEQAMDRVHRIGQKEAVHIVRLIARNSIEEKILMLQEKKKELASKGFRRGSKDTVGSGIGMGINDLRFVLEE* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02684 804 ProSiteProfiles Zinc finger RING-type profile. 556 595 IPR001841 -
Rops8g02684 804 Gene3D - 9 128 - -
Rops8g02684 804 Pfam HIRAN domain 19 113 IPR014905 GO:0003676|GO:0008270|GO:0016818
Rops8g02684 804 Coils Coil 757 777 - -
Rops8g02684 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 540 611 IPR013083 -
Rops8g02684 804 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 628 799 IPR001650 -
Rops8g02684 804 Gene3D - 461 790 IPR027417 -
Rops8g02684 804 SMART HIRAN_2 18 114 IPR014905 GO:0003676|GO:0008270|GO:0016818
Rops8g02684 804 SMART ultradead3 189 428 IPR014001 -
Rops8g02684 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 442 IPR027417 -
Rops8g02684 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 777 IPR027417 -
Rops8g02684 804 SMART ring_2 556 594 IPR001841 -
Rops8g02684 804 CDD SF2_C_SNF 622 755 - -
Rops8g02684 804 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 155 800 - -
Rops8g02684 804 Pfam SNF2-related domain 196 513 IPR000330 GO:0005524|GO:0140658
Rops8g02684 804 SUPERFAMILY RING/U-box 552 604 - -
Rops8g02684 804 ProSitePatterns Zinc finger RING-type signature. 571 580 IPR017907 -
Rops8g02684 804 Gene3D - 165 460 IPR038718 -
Rops8g02684 804 Pfam Helicase conserved C-terminal domain 628 744 IPR001650 -
Rops8g02684 804 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 235 421 IPR014001 -
Rops8g02684 804 Pfam Zinc finger, C3HC4 type (RING finger) 556 594 IPR018957 GO:0046872
Rops8g02684 804 CDD RING-HC_HLTF 551 603 - -
Rops8g02684 804 SMART helicmild6 659 744 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02684 Rops-Chr8 60844234 60845586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02684 5 784 RAD5 or RAD16-like Gene Family AT5G05130 56.438 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops8g02684 SNF2_N 1.9e-57 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02684 K15711 - vvi:100263696 950.273