Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02682 ATGAAGTCTGGTTCACTGGATCAGTGGAGGAATTACTTTAGGTCTGCAAATTCTGATATATTTGATATAATTGACCATGCGATCATGGTAGCCGCTTCTGATTGCCCCAAGGAGTTTAGGTTGAGGAGGGATGGGATTGCAGAGAGGTTGTTCTCTTGTAGGTTGACTCGTTGTTTGGGGTGTGATAAGGTGGAGTTGGCTGTTCCTGGGGGTGATGGTGGTGATGATGATGATGATGAGGGAGGTTGCAAGAGTGGTTTTGATAGAGATGGGGTTGAGTTAGAAGCAGGGGCAAGCAAAGAGAGCAAGGTTAATTATAGTAGAGATGATCATGGAGAGATGGATGTGAACCGTGTCAGTAATTATAGCTTTGGGGATGCTGAGGCTTTGACTGATGAGATTGAAGAAGAGTCTCAGTATGTTGGTGAGGTTTTGAGGATCAGAGACATTCTGTATAACCGTGAAGAACAGTCTGATTCTGTGTTATTTGAGTCGTTGAGGAGGCTCCAACTGATGGAACTCACTGTGGATCTTCTAAAGGCAACTGAAATTGGAAAGGCTGTCAATCCTCTCCGAAAGTATGCATCAAAGGATGTTCGTCAACTTGCACGGACTCTTATCGATGGCTGGAAAGAAATGGTAGATGAGTGGGTCAAGGCGACAACTACCACAGCTATTGCAGCTTCAGAAGGCACACCAGATTCAGTAAATCCATCTGTTGTTGATGATGAAGAAGAAGAAGAAGAAGGACTTCCGTCTCCTCCTCTGGATGAAGGAGCTTTCTTTGTAACTCAAACCGGTTCAATGGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACAGAGTGCGCAATTCAATAACAAGAACCGTGAAAATGGCAGAAAGCCTGGTTTGGACAATCAAATTATAGACAAGAGGAAATTGCAAGCTTCCAATCAGACTGCCATCACTGCCAAGGACAGTAAGAATCAGCAAGCAAAGAAGAATGAGGGTGCTGTGAGGCTAAATAAACCAGTAACTGCTGATTCTGGCCCTGGCAGACCACCAAAATCAAGCATGCAGCGAAAAAGCAATATAGAGCCAAAGGCGCAGCATAAAATAGAGAACAATACAGTCACAAGGAGGCCTCCTATTGGTCAGCAAGATAAATCCAAGTGTTCAGATGATGCTGCAGTCCAAGTGAAGCTAGAAGCCACTAAGAGGAAACTTCAGGAGCGTTATCAACAAGCTGAAAATGCTAAGAGGCAGCGTACAATACAAGTTATGGAATTAAATGATCTTCCCAAGCAAGGGGTTGCCCACAGAAATCCACATTTCAAGCCTGGAAATCACAATAGGCATTGGGCTAATGCAAGAAGATAG 1377 0.4415 MKSGSLDQWRNYFRSANSDIFDIIDHAIMVAASDCPKEFRLRRDGIAERLFSCRLTRCLGCDKVELAVPGGDGGDDDDDEGGCKSGFDRDGVELEAGASKESKVNYSRDDHGEMDVNRVSNYSFGDAEALTDEIEEESQYVGEVLRIRDILYNREEQSDSVLFESLRRLQLMELTVDLLKATEIGKAVNPLRKYASKDVRQLARTLIDGWKEMVDEWVKATTTTAIAASEGTPDSVNPSVVDDEEEEEEGLPSPPLDEGAFFVTQTGSMELSQFFDGMDDDGNPRQSAQFNNKNRENGRKPGLDNQIIDKRKLQASNQTAITAKDSKNQQAKKNEGAVRLNKPVTADSGPGRPPKSSMQRKSNIEPKAQHKIENNTVTRRPPIGQQDKSKCSDDAAVQVKLEATKRKLQERYQQAENAKRQRTIQVMELNDLPKQGVAHRNPHFKPGNHNRHWANARR* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02682 458 CDD TFIIS_I 143 215 - -
Rops8g02682 458 Coils Coil 398 425 - -
Rops8g02682 458 MobiDBLite consensus disorder prediction 435 458 - -
Rops8g02682 458 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 446 IPR044805 -
Rops8g02682 458 MobiDBLite consensus disorder prediction 444 458 - -
Rops8g02682 458 Pfam TFIIS helical bundle-like domain 166 214 IPR017923 -
Rops8g02682 458 MobiDBLite consensus disorder prediction 324 394 - -
Rops8g02682 458 MobiDBLite consensus disorder prediction 69 89 - -
Rops8g02682 458 SMART TFS2_5 141 216 IPR003617 GO:0005634
Rops8g02682 458 ProSiteProfiles TFIIS N-terminal domain profile. 142 217 IPR017923 -
Rops8g02682 458 MobiDBLite consensus disorder prediction 273 305 - -
Rops8g02682 458 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 140 222 IPR035441 -
Rops8g02682 458 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 227 IPR035441 -
Rops8g02682 458 MobiDBLite consensus disorder prediction 239 253 - -
Rops8g02682 458 MobiDBLite consensus disorder prediction 226 259 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Rops8g02682 Med26 5.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02682 - - gmx:100799367 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02682 8 60792061 60796629 Rops8g02682 8 60792061 60796629 ECH