Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02675 ATGCCTTCGAATTCAAAGCAAAAGAAGCAATCGAAGGCACACTCAAGGTTATCATCATCATCATCATCATCCACTCCCGAACCCACCACAACTTCCGAAACCCTCCAACCACAACAACTTGCCTCTCTCTCTCTAGAAGCTTCCCGAAAGTTCCCTTCCTTCATCTCACAATCCGCATTCATCGGCGAAATCACCGACATTGAAACTTCCCCTATTTCCTCCAAGGGCTCCAAAATATGGCTTTCAGAACCTTCCATGCTTTCCTCTTCTCTTTCCCCTGGTTCCATTGTCTCCGTGTCTATTCCGTCTTCTAGTAAAGGAAGTAGTGATCAGTTGAATAGCTTTCCTCTCACTTCATTAGCTAATGAATGTGTCAAATGCTATGGATTGGAAATTTGTAAGACGTTGGATGATGCTGCAGGAAACTACTTTGCGCTTGCAACTGTATTTCCTTCCACTAAGGTTTTGAAAAATGGAGTACGCTTGTCTTCAAATCTTTCTTATACCATGGGATGTCCTCCTTTGGGCACAAGTGTGTTTGTTCACCCATTACAGAAACAGTACTTGTCTTCTCTTTCAAATGGGGGCAACGAACTGCATTCTACAGAAAATAATGGTTTGGTTATATATAATTGCAAGGAATTGTATCTTCAGTTGGCTCCTTGTAAGAATGGACTCCCTTTGAAAATTAATAACTTTCCCTCATTGGATTTGTCTAAGGCGAAATCCCGTGTCCAATCTGAGAATGATATTGTTGCATCTCCTAAAACACCTTCTTATGTATCAAGGTTTTCTAATGGTAATGGGTCGTCTTCTCCAGTATTTGAAGATTCAGCATCAAGTATAACCAATCAGAATAGTCAATCAATGGCTTCATTTGATGTTAGCGAGGCAATAGAGAATGAAAGTTCCAGAAAACTACTACAGACGTCTGCGACTTCCTGGTTATATTCTCGTTGTTTACTGCCAGGGAATCTTGTCAATGTCCCAATGTTTTCAGAGCTGTGCATTTTCCAAGTGGTGGGAGCTAAAAAGGTGCCAGTTACCTTACCTGATCATTATCCATCGAATGGGAGCAGTAATTTATATCCTGAGGACGATATAGCAGAAAATGTAAATCTGGTTTTCACTGTCAATTTTGAAACGAAGGTATTTCTATCTCTGCCATCAAATGCAGCATCAGAAGAGCCAATTCAAAGGGATTTATCATGTGTGAAACTTAAACACAAGGTTGCTAATGCTAGCTTATGCGATGATATTTCTAAATTGGGTGGTCTATCTAAAGAATGTACACTTTTAAAGGATATAATTTCATCATCAGTGAAAGATGCTTTATCAAGTTTTGGTTTACGAACTACAAGAGGAGTCCTTCTTCATGGTCCACCTGGTACAGGAAAGACTTCCCTGGCTCAATTATGTGCTCATGACATTGGGGTCAATTTTTTCCCAATAAATGGACCTGAAATCGTTACCCAGTATTATGGGGAAAGTGAGCATGCATTGCATGCAGTTTTTGATTCAGCCATTCAAGCTGCACCTGCCGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGATGGTGGTGAAGAGCTATCTCAAAGATTGGTCGCAACCTTATTGAATCTTATGGATGGAATTAGTAGAACAGAAGGGTTACTTGTAATTGCTGCCACTAATAGGCCTGATCATATTGAACCAGCTCTCAGACGACCTGGAAGATTTGACAAGGAAATTGAAATTGGTGTGCCATCCCCCAAACAACGAGCGGATATTTTGCATACTCTTCTCTGTGAAGTGGATCACTCTCTCTCTGAGATACAGATTGAACACCTTGCCACAGTCACTCATGGTTTTGTGGGTGCTGATTTAGTTGCCCTTTGCAATGAGGCAGCCTTGATTTGTCTACGACGTTATGCTAATTTTAAGAAGACTTACGATGCTTGTTCTGATAACATAACAGAGCAACCTGTTCAGATGAATGGTGTGACAAACTTGAGAGATCATTCAGGTGTTGTAACTTCATCTTTGTCAGATATGTCAGTGGCCTCCAGTCTTGTATCACCATCCTCCATGATTGGAACAACTTCTGAAATTATGGAAATAATTCCTGATAGTGGTGAAGAAGAGCATGTTTTGAAAGTAAGTTTTGAAGATTTTCAGAAGGCTAGGATGAAAATAAGACCCAGTGCCATGAGAGAGGTAATCCTTGAGGTTCCAAAGGTTAATTGGGAAGATGTTGGCGGCCAAAAGGAGGTCAAAGCTCAATTGATGGAAGCAGTAGAATGGCCCCAGAAACACCATGATGCATTCACTCGTATTGGGACTCGCCCTCCAACAGGTATCTTGATGTTTGGGCCTCCAGGTTGTAGCAAAACCCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGACTGAACTTTCTAGCAGTCAAGGGACCTGAACTCTTCAGCAAATGGGTTGGCGAATCTGAAAAGGCTGTCAGATCATTGTTTGCAAAAGCCAGGGCCAATGCCCCATCTATTGTATTTTTTGATGAAATAGATAGTCTCGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTACTTGTTGAATTGGATGGTCTGCATCAGAGAGTTAATGTTACCATCATAGCTGCTACAAATAGGCCAGACAAGATTGACCCTGCTCTTTTGAGACCAGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCTAATGAGGTGGACAGAGAGGAGATATTTTGCATTCATTTGCGTAAAATTCCATGTGGGTCTGATGTTAGCATTAAAGAACTGGCTCGACTCACAGATAGTTGTACTGGGGCCGACATATCACTAATATGTCGGGAAGCAGCTGTGGCAGCAATTGAGGAGAGCCTTGGTGCTTCAGTTATAACAATGAAGCATTTAAAGAAGGCAATCACACAGGTTCAGCCGTCAGAAGTTCAGTCCTACCAAAAGCTGTCAGCAAAATTTCAAAGGGCTGTTCACTGCTGTGATATAAAAGATGAATTCAATCATATGCAGTGCAACAATAAATCTACTTGGTTCAATATTTGGAACATCGGAAAATCTTGCACATCGTTTCTCTATCAGATTCCAGCAGTCATTTTTTATTTGAGGACTGCTCGAAGTGGTTAA 3180 0.4154 MPSNSKQKKQSKAHSRLSSSSSSSTPEPTTTSETLQPQQLASLSLEASRKFPSFISQSAFIGEITDIETSPISSKGSKIWLSEPSMLSSSLSPGSIVSVSIPSSSKGSSDQLNSFPLTSLANECVKCYGLEICKTLDDAAGNYFALATVFPSTKVLKNGVRLSSNLSYTMGCPPLGTSVFVHPLQKQYLSSLSNGGNELHSTENNGLVIYNCKELYLQLAPCKNGLPLKINNFPSLDLSKAKSRVQSENDIVASPKTPSYVSRFSNGNGSSSPVFEDSASSITNQNSQSMASFDVSEAIENESSRKLLQTSATSWLYSRCLLPGNLVNVPMFSELCIFQVVGAKKVPVTLPDHYPSNGSSNLYPEDDIAENVNLVFTVNFETKVFLSLPSNAASEEPIQRDLSCVKLKHKVANASLCDDISKLGGLSKECTLLKDIISSSVKDALSSFGLRTTRGVLLHGPPGTGKTSLAQLCAHDIGVNFFPINGPEIVTQYYGESEHALHAVFDSAIQAAPAVVFIDELDAIAPARKDGGEELSQRLVATLLNLMDGISRTEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPKQRADILHTLLCEVDHSLSEIQIEHLATVTHGFVGADLVALCNEAALICLRRYANFKKTYDACSDNITEQPVQMNGVTNLRDHSGVVTSSLSDMSVASSLVSPSSMIGTTSEIMEIIPDSGEEEHVLKVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHDAFTRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTIIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFCIHLRKIPCGSDVSIKELARLTDSCTGADISLICREAAVAAIEESLGASVITMKHLKKAITQVQPSEVQSYQKLSAKFQRAVHCCDIKDEFNHMQCNNKSTWFNIWNIGKSCTSFLYQIPAVIFYLRTARSG* 1060
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02675 1059 FunFam Calmodulin-interacting protein 111 587 745 - -
Rops8g02675 1059 Pfam ATPase family associated with various cellular activities (AAA) 456 585 IPR003959 GO:0005524|GO:0016887
Rops8g02675 1059 Pfam ATPase family associated with various cellular activities (AAA) 785 916 IPR003959 GO:0005524|GO:0016887
Rops8g02675 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 645 IPR027417 -
Rops8g02675 1059 SMART AAA_5 781 919 IPR003593 GO:0016887
Rops8g02675 1059 SMART AAA_5 452 588 IPR003593 GO:0016887
Rops8g02675 1059 PANTHER AAA-FAMILY ATPASE 74 1007 - -
Rops8g02675 1059 MobiDBLite consensus disorder prediction 1 39 - -
Rops8g02675 1059 CDD RecA-like_CDC48_NLV2_r1-like 422 584 - -
Rops8g02675 1059 FunFam calmodulin-interacting protein 111 isoform X1 742 917 - -
Rops8g02675 1059 FunFam Putative vesicular transport protein (CDC48) 407 585 - -
Rops8g02675 1059 CDD RecA-like_CDC48_r2-like 756 915 - -
Rops8g02675 1059 Gene3D - 407 587 IPR027417 -
Rops8g02675 1059 Gene3D - 588 732 - -
Rops8g02675 1059 FunFam spermatogenesis-associated protein 5-like protein 1 918 1000 - -
Rops8g02675 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 995 IPR027417 -
Rops8g02675 1059 Gene3D - 918 988 - -
Rops8g02675 1059 Pfam AAA+ lid domain 939 985 IPR041569 -
Rops8g02675 1059 Pfam AAA+ lid domain 610 642 IPR041569 -
Rops8g02675 1059 ProSitePatterns AAA-protein family signature. 887 905 IPR003960 GO:0005524|GO:0016887
Rops8g02675 1059 Gene3D - 742 993 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops8g02675 Rops-Chr8 60572990 60584586 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02675 1 1045 Calmodulin-binding Proteins AT3G56690 56.045 0.0 1048
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02675 - - gmx:100788600 1585.85