Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops8g02675 | ATGCCTTCGAATTCAAAGCAAAAGAAGCAATCGAAGGCACACTCAAGGTTATCATCATCATCATCATCATCCACTCCCGAACCCACCACAACTTCCGAAACCCTCCAACCACAACAACTTGCCTCTCTCTCTCTAGAAGCTTCCCGAAAGTTCCCTTCCTTCATCTCACAATCCGCATTCATCGGCGAAATCACCGACATTGAAACTTCCCCTATTTCCTCCAAGGGCTCCAAAATATGGCTTTCAGAACCTTCCATGCTTTCCTCTTCTCTTTCCCCTGGTTCCATTGTCTCCGTGTCTATTCCGTCTTCTAGTAAAGGAAGTAGTGATCAGTTGAATAGCTTTCCTCTCACTTCATTAGCTAATGAATGTGTCAAATGCTATGGATTGGAAATTTGTAAGACGTTGGATGATGCTGCAGGAAACTACTTTGCGCTTGCAACTGTATTTCCTTCCACTAAGGTTTTGAAAAATGGAGTACGCTTGTCTTCAAATCTTTCTTATACCATGGGATGTCCTCCTTTGGGCACAAGTGTGTTTGTTCACCCATTACAGAAACAGTACTTGTCTTCTCTTTCAAATGGGGGCAACGAACTGCATTCTACAGAAAATAATGGTTTGGTTATATATAATTGCAAGGAATTGTATCTTCAGTTGGCTCCTTGTAAGAATGGACTCCCTTTGAAAATTAATAACTTTCCCTCATTGGATTTGTCTAAGGCGAAATCCCGTGTCCAATCTGAGAATGATATTGTTGCATCTCCTAAAACACCTTCTTATGTATCAAGGTTTTCTAATGGTAATGGGTCGTCTTCTCCAGTATTTGAAGATTCAGCATCAAGTATAACCAATCAGAATAGTCAATCAATGGCTTCATTTGATGTTAGCGAGGCAATAGAGAATGAAAGTTCCAGAAAACTACTACAGACGTCTGCGACTTCCTGGTTATATTCTCGTTGTTTACTGCCAGGGAATCTTGTCAATGTCCCAATGTTTTCAGAGCTGTGCATTTTCCAAGTGGTGGGAGCTAAAAAGGTGCCAGTTACCTTACCTGATCATTATCCATCGAATGGGAGCAGTAATTTATATCCTGAGGACGATATAGCAGAAAATGTAAATCTGGTTTTCACTGTCAATTTTGAAACGAAGGTATTTCTATCTCTGCCATCAAATGCAGCATCAGAAGAGCCAATTCAAAGGGATTTATCATGTGTGAAACTTAAACACAAGGTTGCTAATGCTAGCTTATGCGATGATATTTCTAAATTGGGTGGTCTATCTAAAGAATGTACACTTTTAAAGGATATAATTTCATCATCAGTGAAAGATGCTTTATCAAGTTTTGGTTTACGAACTACAAGAGGAGTCCTTCTTCATGGTCCACCTGGTACAGGAAAGACTTCCCTGGCTCAATTATGTGCTCATGACATTGGGGTCAATTTTTTCCCAATAAATGGACCTGAAATCGTTACCCAGTATTATGGGGAAAGTGAGCATGCATTGCATGCAGTTTTTGATTCAGCCATTCAAGCTGCACCTGCCGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGATGGTGGTGAAGAGCTATCTCAAAGATTGGTCGCAACCTTATTGAATCTTATGGATGGAATTAGTAGAACAGAAGGGTTACTTGTAATTGCTGCCACTAATAGGCCTGATCATATTGAACCAGCTCTCAGACGACCTGGAAGATTTGACAAGGAAATTGAAATTGGTGTGCCATCCCCCAAACAACGAGCGGATATTTTGCATACTCTTCTCTGTGAAGTGGATCACTCTCTCTCTGAGATACAGATTGAACACCTTGCCACAGTCACTCATGGTTTTGTGGGTGCTGATTTAGTTGCCCTTTGCAATGAGGCAGCCTTGATTTGTCTACGACGTTATGCTAATTTTAAGAAGACTTACGATGCTTGTTCTGATAACATAACAGAGCAACCTGTTCAGATGAATGGTGTGACAAACTTGAGAGATCATTCAGGTGTTGTAACTTCATCTTTGTCAGATATGTCAGTGGCCTCCAGTCTTGTATCACCATCCTCCATGATTGGAACAACTTCTGAAATTATGGAAATAATTCCTGATAGTGGTGAAGAAGAGCATGTTTTGAAAGTAAGTTTTGAAGATTTTCAGAAGGCTAGGATGAAAATAAGACCCAGTGCCATGAGAGAGGTAATCCTTGAGGTTCCAAAGGTTAATTGGGAAGATGTTGGCGGCCAAAAGGAGGTCAAAGCTCAATTGATGGAAGCAGTAGAATGGCCCCAGAAACACCATGATGCATTCACTCGTATTGGGACTCGCCCTCCAACAGGTATCTTGATGTTTGGGCCTCCAGGTTGTAGCAAAACCCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGACTGAACTTTCTAGCAGTCAAGGGACCTGAACTCTTCAGCAAATGGGTTGGCGAATCTGAAAAGGCTGTCAGATCATTGTTTGCAAAAGCCAGGGCCAATGCCCCATCTATTGTATTTTTTGATGAAATAGATAGTCTCGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTACTTGTTGAATTGGATGGTCTGCATCAGAGAGTTAATGTTACCATCATAGCTGCTACAAATAGGCCAGACAAGATTGACCCTGCTCTTTTGAGACCAGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCTAATGAGGTGGACAGAGAGGAGATATTTTGCATTCATTTGCGTAAAATTCCATGTGGGTCTGATGTTAGCATTAAAGAACTGGCTCGACTCACAGATAGTTGTACTGGGGCCGACATATCACTAATATGTCGGGAAGCAGCTGTGGCAGCAATTGAGGAGAGCCTTGGTGCTTCAGTTATAACAATGAAGCATTTAAAGAAGGCAATCACACAGGTTCAGCCGTCAGAAGTTCAGTCCTACCAAAAGCTGTCAGCAAAATTTCAAAGGGCTGTTCACTGCTGTGATATAAAAGATGAATTCAATCATATGCAGTGCAACAATAAATCTACTTGGTTCAATATTTGGAACATCGGAAAATCTTGCACATCGTTTCTCTATCAGATTCCAGCAGTCATTTTTTATTTGAGGACTGCTCGAAGTGGTTAA | 3180 | 0.4154 | MPSNSKQKKQSKAHSRLSSSSSSSTPEPTTTSETLQPQQLASLSLEASRKFPSFISQSAFIGEITDIETSPISSKGSKIWLSEPSMLSSSLSPGSIVSVSIPSSSKGSSDQLNSFPLTSLANECVKCYGLEICKTLDDAAGNYFALATVFPSTKVLKNGVRLSSNLSYTMGCPPLGTSVFVHPLQKQYLSSLSNGGNELHSTENNGLVIYNCKELYLQLAPCKNGLPLKINNFPSLDLSKAKSRVQSENDIVASPKTPSYVSRFSNGNGSSSPVFEDSASSITNQNSQSMASFDVSEAIENESSRKLLQTSATSWLYSRCLLPGNLVNVPMFSELCIFQVVGAKKVPVTLPDHYPSNGSSNLYPEDDIAENVNLVFTVNFETKVFLSLPSNAASEEPIQRDLSCVKLKHKVANASLCDDISKLGGLSKECTLLKDIISSSVKDALSSFGLRTTRGVLLHGPPGTGKTSLAQLCAHDIGVNFFPINGPEIVTQYYGESEHALHAVFDSAIQAAPAVVFIDELDAIAPARKDGGEELSQRLVATLLNLMDGISRTEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPKQRADILHTLLCEVDHSLSEIQIEHLATVTHGFVGADLVALCNEAALICLRRYANFKKTYDACSDNITEQPVQMNGVTNLRDHSGVVTSSLSDMSVASSLVSPSSMIGTTSEIMEIIPDSGEEEHVLKVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHDAFTRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTIIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFCIHLRKIPCGSDVSIKELARLTDSCTGADISLICREAAVAAIEESLGASVITMKHLKKAITQVQPSEVQSYQKLSAKFQRAVHCCDIKDEFNHMQCNNKSTWFNIWNIGKSCTSFLYQIPAVIFYLRTARSG* | 1060 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops8g02675 | 1059 | FunFam | Calmodulin-interacting protein 111 | 587 | 745 | - | - | |
Rops8g02675 | 1059 | Pfam | ATPase family associated with various cellular activities (AAA) | 456 | 585 | IPR003959 | GO:0005524|GO:0016887 | |
Rops8g02675 | 1059 | Pfam | ATPase family associated with various cellular activities (AAA) | 785 | 916 | IPR003959 | GO:0005524|GO:0016887 | |
Rops8g02675 | 1059 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 421 | 645 | IPR027417 | - | |
Rops8g02675 | 1059 | SMART | AAA_5 | 781 | 919 | IPR003593 | GO:0016887 | |
Rops8g02675 | 1059 | SMART | AAA_5 | 452 | 588 | IPR003593 | GO:0016887 | |
Rops8g02675 | 1059 | PANTHER | AAA-FAMILY ATPASE | 74 | 1007 | - | - | |
Rops8g02675 | 1059 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Rops8g02675 | 1059 | CDD | RecA-like_CDC48_NLV2_r1-like | 422 | 584 | - | - | |
Rops8g02675 | 1059 | FunFam | calmodulin-interacting protein 111 isoform X1 | 742 | 917 | - | - | |
Rops8g02675 | 1059 | FunFam | Putative vesicular transport protein (CDC48) | 407 | 585 | - | - | |
Rops8g02675 | 1059 | CDD | RecA-like_CDC48_r2-like | 756 | 915 | - | - | |
Rops8g02675 | 1059 | Gene3D | - | 407 | 587 | IPR027417 | - | |
Rops8g02675 | 1059 | Gene3D | - | 588 | 732 | - | - | |
Rops8g02675 | 1059 | FunFam | spermatogenesis-associated protein 5-like protein 1 | 918 | 1000 | - | - | |
Rops8g02675 | 1059 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 743 | 995 | IPR027417 | - | |
Rops8g02675 | 1059 | Gene3D | - | 918 | 988 | - | - | |
Rops8g02675 | 1059 | Pfam | AAA+ lid domain | 939 | 985 | IPR041569 | - | |
Rops8g02675 | 1059 | Pfam | AAA+ lid domain | 610 | 642 | IPR041569 | - | |
Rops8g02675 | 1059 | ProSitePatterns | AAA-protein family signature. | 887 | 905 | IPR003960 | GO:0005524|GO:0016887 | |
Rops8g02675 | 1059 | Gene3D | - | 742 | 993 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops8g02675 | Rops-Chr8 | 60572990 | 60584586 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops8g02675 | 1 | 1045 | Calmodulin-binding Proteins | AT3G56690 | 56.045 | 0.0 | 1048 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops8g02675 | - | - | gmx:100788600 | 1585.85 |