Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02674 ATGAGGGAAGAGGATTCAAATTGGTTTTCAAGATGGGAAGAGGATCTCCCTTCCCCAGGGGAACTCATGCCCTTATCCCAAACCCTAATTACCCCTGATCTAGCCATGGCCTTTGACATCAGAAACCCACACACCACCCCGACAACCACCACCACCCCACAACAGCAACAGCAACAACAACCCCCTGCACCTTCCAACCCTTCACCCCTCCCTTCCTCCACCGATTTCGCCGATTCCGGCGAACTGGGGTCTGGCACCGCCGGCGAGGAACCTGCCCGGACACTCAAAAGGCCACGCCTTGTTTGGACCCCACAACTCCACAAGCGCTTCGTTGACGCCGTGGCACACCTTGGGATCAAAAACGCGGTTCCAAAGACCATAATGCAGCTCATGAGTGTTGATGGTTTAACCAGAGAAAACGTTGCTAGCCACTTGCAGAAATACCGTCTTTATCTGAAACGCATGCAGGGCATTTCCGCCGGTGGACCCGCCGGCGCCGGTGGTGGAGCCGGTCCTGCCGTTGCCGCAGACCCTGCCACCGACCACCTCTTCGCCAGCTCCCCGGTGCCTCCACATTTCTTGCATCCCGCGGCAGCACGGCCTAATTCAGATCACTTCTTGCCGTTTGTGCCTGTCCCTGCCCTCCACCACCACCATCAGCAGCAGCTTGCTGCGGCGCAGTATCACCGGCCGGTGGGGCATTTCGGTTCTCCGCCGAATGGACACTTTGAGAATCCTTTCCTTTCGAGGCAGCAGCAACAGCAACAGCTTCATAGGATGGGGGCACCTGTGCACAACCCTGTTCCTGGTTATGTGGAGGACATGGAATCAGCTAATGCGTCTGGAGGGAGAAAGGTTCTTACTTTGTTTCCAACTGGAGATGATTGA 888 0.5642 MREEDSNWFSRWEEDLPSPGELMPLSQTLITPDLAMAFDIRNPHTTPTTTTTPQQQQQQQPPAPSNPSPLPSSTDFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAGGPAGAGGGAGPAVAADPATDHLFASSPVPPHFLHPAAARPNSDHFLPFVPVPALHHHHQQQLAAAQYHRPVGHFGSPPNGHFENPFLSRQQQQQQLHRMGAPVHNPVPGYVEDMESANASGGRKVLTLFPTGDD* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02674 295 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Rops8g02674 295 MobiDBLite consensus disorder prediction 244 260 - -
Rops8g02674 295 Gene3D - 94 156 - -
Rops8g02674 295 MobiDBLite consensus disorder prediction 42 59 - -
Rops8g02674 295 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 257 IPR044841 GO:0003700|GO:0006355
Rops8g02674 295 MobiDBLite consensus disorder prediction 231 264 - -
Rops8g02674 295 MobiDBLite consensus disorder prediction 276 295 - -
Rops8g02674 295 MobiDBLite consensus disorder prediction 1 96 - -
Rops8g02674 295 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
Rops8g02674 295 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Rops8g02674 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Rops8g02674 295 FunFam Two-component response regulator 93 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02674 Rops-Chr8 60564645 60566891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02674 1 295 G2-like Transcription Factor Family AT3G10760 56.695 1.14e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops8g02674 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02674 - - ccaj:109802866 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02674 8 60564645 60566891 Rops8g02674 8 60564645 60566891 ECH