Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02657 ATGGCACTCTCTCAGCTAAGCCACTCTCTGGAAAATGAACTGAAAAGTGAAGAAGACTCAGAAGTCCCTTTCAAGGAAATTGGAAATGAAGGTCTCACAAAAAGGATTCTCAAAAAAGGAGTCACTTGGAAAACTCCATTATCTGGAGATGAAGTGGAAGTTCATTTCAGAGGACAAGTTGAAAATGGAGCATATCTTGAATCCAGTTATGATAAAGGGTCCTCGTTTCATTTCAAATTAGGCCAAGGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCCACTATGAAGAAAGGGAAAAGAGCAATCTTAAAAATACCACCCAACTTGGCATATGGAGCAGTAGGTTCTCCACCATTGATTCCTCCCAATGCAACTCTCATTTTTGACATTGAAATGCTGTCTTGGAGTACCATCAGGGACTTGACTGGTGATGGAGGAATCATGAAAAAGATAATAAGGGAGGGAGAAGGGTGGGCTACTCCCAGAGAAGCTGATGAGGTGCTAGTGAAATATGAAGCAAGGCAAGAGAATGGGCTGCTTGTGTCTAAGTCTGATAAAGGTGTGGAGTTTAATGTAAGTGATGGTTATCTTTGTCCTGCCATGAGTATAGCAGTAAAGACAATGAGAAAAGGCGAGGTGGCAGAGCTAGCTATGAAATTCTTTTATAGGCTCAGTCAAAATTCAAATAGAACCACTGAGCTTGATGGTTCACCAGATTGTAATTTAACTACCATCAAACTTGAGCTGGTATCATGGAAAATGGTTACTGATGTCTCAGGAGATAAGAAGATATTGAAAAAAATTAAGAAAGCTGGTGAGGGGTTTGATCGTCCTAACGAAGGATCCCTAGTGAAAGTGATATATTTATGTAAACGAGAAGATGGTACAATTATTGAGATGAAAGGGTCAATGGAAGAACCTTTTGAGTTCACAACTCAAGAAGAACAGGTACATGAGGGTCTAGAAAGAGCAATAATGACAATGAAAAAAGCAGAACAAGCTCTGGTGACTATTAGTGCCGAATATTTGCATGACCATGATAATTTACAAGGAAACACAGGCAATAATGAAGTCCTTTATTACGAAGTTGAATTGCTTGATTTCATTAAGGAGAAGCCATTTTGGAAAATGGACACTCGAGAAAAAATGGAAGCTTGTGAGAGGAAGAAGCATGATGGAAATCTGTTATTCAAGGCTGAGAATTTCATACGTGCATTCAAGAAATACGAGAAGGCTATAAAGTACATTGAGTTTGATCATTCATTCAGTGAAGATGAGAAGCGTCATGCTAATTCCTTACGATTATCCTGTAATTTGAACAAAGCTGCTTGTAAACTTAAATTGGGGGAGTACACTGAAGCTTCCAGACTATGCACAAAGGTATTAGAACAAGACCCTTTAAATGTCAAGGCTCTTTATAGAAGATGCCAAGCATACCTGAAAACATCAGACTTGGAGAAAGCTGAGGCTGACATTAAAAGAGCTCTGATTATTGATCCAAATAACAGAACAATGAATAATTATTGGTTCACTTGGACTGTTATCAGAGACATTAAACTTGAGTACAAAGAGCTTAAACTAAAGCAAAAGGAATACAGTAGATATGAAGCTGACATCTTCAGTACAATGCTTTCAAGGATGACCTAG 1650 0.3855 MALSQLSHSLENELKSEEDSEVPFKEIGNEGLTKRILKKGVTWKTPLSGDEVEVHFRGQVENGAYLESSYDKGSSFHFKLGQGEVIKGWDEGVATMKKGKRAILKIPPNLAYGAVGSPPLIPPNATLIFDIEMLSWSTIRDLTGDGGIMKKIIREGEGWATPREADEVLVKYEARQENGLLVSKSDKGVEFNVSDGYLCPAMSIAVKTMRKGEVAELAMKFFYRLSQNSNRTTELDGSPDCNLTTIKLELVSWKMVTDVSGDKKILKKIKKAGEGFDRPNEGSLVKVIYLCKREDGTIIEMKGSMEEPFEFTTQEEQVHEGLERAIMTMKKAEQALVTISAEYLHDHDNLQGNTGNNEVLYYEVELLDFIKEKPFWKMDTREKMEACERKKHDGNLLFKAENFIRAFKKYEKAIKYIEFDHSFSEDEKRHANSLRLSCNLNKAACKLKLGEYTEASRLCTKVLEQDPLNVKALYRRCQAYLKTSDLEKAEADIKRALIIDPNNRTMNNYWFTWTVIRDIKLEYKELKLKQKEYSRYEADIFSTMLSRMT* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02657 549 Coils Coil 322 342 - -
Rops8g02657 549 SUPERFAMILY FKBP-like 254 389 - -
Rops8g02657 549 ProSiteProfiles TPR repeat profile. 470 503 IPR019734 GO:0005515
Rops8g02657 549 MobiDBLite consensus disorder prediction 1 22 - -
Rops8g02657 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 278 367 IPR001179 GO:0003755
Rops8g02657 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 46 134 IPR001179 GO:0003755
Rops8g02657 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 161 223 IPR001179 GO:0003755
Rops8g02657 549 PANTHER PEPTIDYLPROLYL ISOMERASE 11 136 - -
Rops8g02657 549 Gene3D - 140 254 IPR046357 GO:0003755
Rops8g02657 549 FunFam Peptidylprolyl isomerase 3 138 - -
Rops8g02657 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 282 370 IPR001179 GO:0003755
Rops8g02657 549 Pfam Tetratricopeptide repeat 470 503 IPR001440 GO:0005515
Rops8g02657 549 Gene3D - 20 139 IPR046357 GO:0003755
Rops8g02657 549 Gene3D Tetratricopeptide repeat domain 373 542 IPR011990 GO:0005515
Rops8g02657 549 FunFam Peptidylprolyl isomerase 375 543 - -
Rops8g02657 549 SMART tpr_5 436 469 IPR019734 GO:0005515
Rops8g02657 549 SMART tpr_5 387 420 IPR019734 GO:0005515
Rops8g02657 549 SMART tpr_5 470 503 IPR019734 GO:0005515
Rops8g02657 549 SUPERFAMILY TPR-like 380 533 IPR011990 GO:0005515
Rops8g02657 549 SUPERFAMILY FKBP-like 142 221 - -
Rops8g02657 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 165 254 IPR001179 GO:0003755
Rops8g02657 549 SUPERFAMILY FKBP-like 27 137 - -
Rops8g02657 549 Gene3D - 255 372 IPR046357 GO:0003755
Rops8g02657 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 49 137 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02657 Rops-Chr8 60292386 60298237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02657 26 548 Calmodulin-binding Proteins AT5G48570 52.166 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02657 - - gmx:100785412 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02657 8 60292386 60298237 Rops8g02657 8 60292386 60298237 ECH