Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02616 ATGGGGAGGAAGCGAAAGATCGCACCTAAATCTTCTCAATCTGCAGAACCCCCTCTGAAACAGCATCAACCAGAACAAGATAATGCAGCAGAAGAATACGAAGAGGTCGAAGAAGAAGTAGAGGAAGAAGTAGAAGAAGAAGTAGAGGAAGAAGAAGAAGAAGAAGAAGAGGGAGAAGAAGAAGAGGATGAAGAAGATCAAGATAATGAAGGAGAACAAGAGCAACAACAAGGACGAGGAGAAGGAGAAGATGAAGAACCGATCCAGAATCTTCTAGAACCTTTCAGTAAGGAACAGATCATGAACCTCCTCGTCGAGGCGGCGAACAAGTATCGTGACGTGGCGGAAAGGATCCGCAGGGTTGCTGATGGGGATGCGGTGCACCGGAAAATCTTCGTCCACGGTCTCGGATGGGACACCACCGCCACAACATTGATTAACGCGTTCCAGCAATACGGTGAGATCGAGGATTGCAAGGCGGTTACCGACAAGGTCTCAGGGAAATCCAAGGGTTACGGTTTCATCCTCTTCAAAACTCGCCGTGGTGCACGGAACGCGTTGAAGGAGCCGCAGAAGAAGATCGGGAACCGCATGACGGCGTGCCAGCTGGCATCTGTGGGTCCCGTTCAGCAACAGCCGCAGGTTGTGCCACCGCCGCAGGGGCCGCAGCTTTCGGAGTATACGCAGAGGAAGATCTATGTGAGTAACGTTGGTGCTGATTTGGATCCGCAGAAGCTTCTAGCGTTCTTCTCGCGGTTCGGAGAGATTGAGGAAGGGCCGTTGGGGCTTGATAAGGTCACCGGAAAGCCAAAAGGGTTCTGTTTGTTCGTTTATAAGACCGCGGAGAGCTCGAAGAGGGCGTTGGAGGAGCCTCATAAGGAATTCGAGGGTCATATTTTGCATTGCCAGAAGGCAATTGATGGTCCAAAGATTGGGAAGATGCAGCAGCAGCAACAGCATGGGAATCCTCTTAACCAAAGGGCACAATTTCAGAGGAATGATAATACTGGCTTTGTTGGTGGTGGAGCTACTGCTGCCCAACCGGGGCATTTAATGGCACCAGCTGGACCGGGAATCGGGGGGTTCCAGGCGGCGCAGGCGCTGAACCCGGCTTTAGGGCAGGCACTGACAACATTGCTTGCATCTCAGGGTGCTACTTTGGGGCTGACTAATTTGTTGGGGAGTCTTGGAACTAGTGGTGCGGTTAACACCGGTGTCCCTGCTGCGGGGCATGGAGTGCAGGGTGGTTACAATGCTCAATCAAATATTAGCTCTGGTGTAATTGGAGGATATGGGAATCAGGTAGGATTGCAGACTCAATACCCGAACCAGCAGATAGGGCAGGGTGGCTCTGGAAGAGGACAATATGGTGGTGTTGCACCTTACATGGGGCACTAG 1398 0.5186 MGRKRKIAPKSSQSAEPPLKQHQPEQDNAAEEYEEVEEEVEEEVEEEVEEEEEEEEEGEEEEDEEDQDNEGEQEQQQGRGEGEDEEPIQNLLEPFSKEQIMNLLVEAANKYRDVAERIRRVADGDAVHRKIFVHGLGWDTTATTLINAFQQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKEPQKKIGNRMTACQLASVGPVQQQPQVVPPPQGPQLSEYTQRKIYVSNVGADLDPQKLLAFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKTAESSKRALEEPHKEFEGHILHCQKAIDGPKIGKMQQQQQHGNPLNQRAQFQRNDNTGFVGGGATAAQPGHLMAPAGPGIGGFQAAQALNPALGQALTTLLASQGATLGLTNLLGSLGTSGAVNTGVPAAGHGVQGGYNAQSNISSGVIGGYGNQVGLQTQYPNQQIGQGGSGRGQYGGVAPYMGH* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02616 465 FunFam UBP1-associated protein 2A 215 346 - -
Rops8g02616 465 SUPERFAMILY RNA-binding domain, RBD 209 331 IPR035979 GO:0003676
Rops8g02616 465 Gene3D - 20 210 IPR012677 -
Rops8g02616 465 MobiDBLite consensus disorder prediction 1 86 - -
Rops8g02616 465 SMART rrm1_1 130 202 IPR000504 GO:0003723
Rops8g02616 465 SMART rrm1_1 231 303 IPR000504 GO:0003723
Rops8g02616 465 Coils Coil 19 68 - -
Rops8g02616 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 311 IPR000504 GO:0003723
Rops8g02616 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 300 IPR000504 GO:0003723
Rops8g02616 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 197 IPR000504 GO:0003723
Rops8g02616 465 MobiDBLite consensus disorder prediction 30 71 - -
Rops8g02616 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 206 IPR000504 GO:0003723
Rops8g02616 465 SUPERFAMILY RNA-binding domain, RBD 124 213 IPR035979 GO:0003676
Rops8g02616 465 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 35 314 - -
Rops8g02616 465 Gene3D - 211 323 IPR012677 -
Rops8g02616 465 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02616 Rops-Chr8 59641266 59644791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02616 226 325 C2H2 Transcription Factor Family AT2G19380 34.000 1.12e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02616 K12741 - gmx:100784200 567