Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02613 ATGAAGAGTCTCCAAGAAGGAAAGGGGATCTCTCCTCAAACCCTCGACAATCTCCACGTTGGAATTCGTTTGTTCAATTTTAAGTCTCTCCTAGTGAGTATAACTATGTATCATGCAAAGAAGTTTTCGCCGGCAAGCATGGTGCCACATAAATCTCAAGGTGGTGCTGAACAACTTGCAAATGTTGGGGTATTGAGTGGATCTGCAGTGAAAAATGCCACACCTGCTGCTGGGGGAAGTGGGAAAAAACGTTTACGATGGACTTCTGATCTTCATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTGAGAGTGATGGGTGTACCTGGACTGACCATTTATCACGTTAAAAGCCATTTACAGAAGTATCGCCTTGCAAAGTATTTGCCTGAATCATCAGCAGATGGTAAAGACTCTAAAGATGAGAAAAGGAATTCTGGAGACAGCATTTCTGGCACTGATTCTTCCCCGGGATTGCAAATCAATGACGCTCTAAGAATGCAGATGGAGGTCCAGAAACGTCTGCATGAACAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACCTGCAGAAGATCATAGAGGAACAGCAGAAATTAGGTAGCACCTTGACAACCTCAGAAACACTTCCATTGTCCCATGATAAGCAAAATCATCCCCAGTCAGAGCCTTCTGGATCCAGTGATGCCCTTGCAGGCACTTTGTCTCCACTTAAAAAGCAGAGAATTGATGATGGTTCAAAGGATGGTTTCACGGCTTCCCAAATTCAAAGAAAGACTGCAAAGAAGAATGACTGTAGTGTTGGTCAATTGGATGCAAACTTGTATGAGGATGATGCTGGGTTTGGATTTGATTTGGAGACAGAGAAGGATGAAGATATGGAGAGTGAACAGTAA 948 0.4325 MKSLQEGKGISPQTLDNLHVGIRLFNFKSLLVSITMYHAKKFSPASMVPHKSQGGAEQLANVGVLSGSAVKNATPAAGGSGKKRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESSADGKDSKDEKRNSGDSISGTDSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTTSETLPLSHDKQNHPQSEPSGSSDALAGTLSPLKKQRIDDGSKDGFTASQIQRKTAKKNDCSVGQLDANLYEDDAGFGFDLETEKDEDMESEQ* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02613 315 FunFam Myb family transcription factor 81 139 - -
Rops8g02613 315 Pfam Myb-like DNA-binding domain 85 135 IPR001005 -
Rops8g02613 315 SUPERFAMILY Homeodomain-like 81 136 IPR009057 -
Rops8g02613 315 Gene3D - 81 140 - -
Rops8g02613 315 MobiDBLite consensus disorder prediction 225 285 - -
Rops8g02613 315 MobiDBLite consensus disorder prediction 299 315 - -
Rops8g02613 315 MobiDBLite consensus disorder prediction 225 251 - -
Rops8g02613 315 MobiDBLite consensus disorder prediction 265 281 - -
Rops8g02613 315 MobiDBLite consensus disorder prediction 143 171 - -
Rops8g02613 315 Pfam MYB-CC type transfactor, LHEQLE motif 170 216 IPR025756 -
Rops8g02613 315 MobiDBLite consensus disorder prediction 296 315 - -
Rops8g02613 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 79 257 IPR044848 GO:0003700
Rops8g02613 315 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 137 IPR006447 GO:0003677
Rops8g02613 315 Coils Coil 173 193 - -
Rops8g02613 315 MobiDBLite consensus disorder prediction 143 159 - -
Rops8g02613 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 139 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02613 Rops-Chr8 59602218 59613686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02613 73 264 G2-like Transcription Factor Family AT3G04450 44.724 3.51e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops8g02613 Myb_DNA-binding 3.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02613 - - tpra:123889278 469.544