Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02611 ATGGTGCCACATAAATCTCAAGGTGGTGCTGAACAACTTGCAAATGTTGGGGTATTGAGTGGATCTGCAGTGAAAAATGCCACACCTGCTGCTGGGGGAAGTGGGAAAAAACGTTTACGATGGACTTCTAATCTTCATGACCGTTTTGTGGATGCCATTAGACAACTTGGTGGACCAGATAGTGGGAGCAACACCAAAGGTGTTCTGAGAGTGATGGGTGTACCTGGACTGACCATTTATCACGTTAAAAGCCATTTACAAAAGTATCGCCTTGCAAAGTATTTGCCTGAATCATCAGCAAATGGTAAAGACTCTAAAGATGAGAAAAGGAATTCTGGAGACAACATTTCTAGCACTGATTCTTCCCCGGGATTGCAAATCAATGACGCTCTAAGAATGCAGATGGAGGTCCAGAAACGTCTGCATGAACAGCTTGAGGTAAGAGGTTTAGAAAGAGTTAAAGACCCAAAAGAAAAATGA 480 0.4292 MVPHKSQGGAEQLANVGVLSGSAVKNATPAAGGSGKKRLRWTSNLHDRFVDAIRQLGGPDSGSNTKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESSANGKDSKDEKRNSGDNISSTDSSPGLQINDALRMQMEVQKRLHEQLEVRGLERVKDPKEK* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02611 159 MobiDBLite consensus disorder prediction 95 132 - -
Rops8g02611 159 Pfam MYB-CC type transfactor, LHEQLE motif 125 147 IPR025756 -
Rops8g02611 159 NCBIfam myb-like DNA-binding domain, SHAQKYF class 36 92 IPR006447 GO:0003677
Rops8g02611 159 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 34 147 IPR044848 GO:0003700
Rops8g02611 159 Coils Coil 128 148 - -
Rops8g02611 159 Gene3D - 35 95 - -
Rops8g02611 159 SUPERFAMILY Homeodomain-like 35 92 IPR009057 -
Rops8g02611 159 MobiDBLite consensus disorder prediction 100 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02611 Rops-Chr8 59564174 59566173 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02611 33 148 G2-like Transcription Factor Family AT4G28610 55.172 2.99e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops8g02611 Myb_CC_LHEQLE 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02611 - - tpra:123889278 246.899