LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g02575	ATGTTGGATATGAGCCCCAACATGCTATTTGAGACAATACAAGCATATGTTGATAATGATGATGATGATGTCTGTTGTGCTACCACATCAATGAGTATTTGCGTGATGCATACTGGGAGACGGATGGCATTGAAAGAGTTACTACTACTCCTCCTCCTCCTTCTTCCTTTGCGAAACGCCAACTCAGATCGAACTCCACCACCAAAACTTTCTAGTATTTTCCGTGTGATCGTTTCGGAAATGGGAAGCAGAAAGGAAGAAGAAAGGAACGAGAAAATCATCAGAGGTCTCATGAAGCTTCCACCGAATCGAAGATGCATCAACTGTAATAGTCTGGGTCCACAATATGTTTGTACGAATTTTTGGACCTTCGTTTGCACGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTCAAGTCTGTATCTATGTCAAAGTTCACTTCACAAGAGGTTGATGCTCTTCAAAATGGGGGTAACCAGCGTGCAAGGGATATATATTTGAAAAATTGGGACTTCCAAACACAGCGATTGTCAGATAGCAGCAACGTTGATAAAATAAGAGAGTTTATACGGAATGTATATGTCGATCGAAGATATGCTGCAGCAAAGTCCTCTGATAAGCCTCCAAGAGATATGCAGAGCCCTAGAATCCATGAAGATGATACAAGGCGTGCCAGTTCTTATCACTCGTATTCTCAAAGTCCTCCATATGATTACCAATACGAAGATAGAAGATATGGAAAACAAGTGGCTGCACTGACCAGGAAGCCTGGTTCAGATAAAGTTCGCTATGAAGGAAAGATAAGTAGTATTATATATAGTCCAGGTCGCTTCAGTGATCATGCATATGATGACAGAGTTGCAAATGAGGGATCAGGTCCGAGAATTTCTGACTTTTCTGTGTCTAATGGTGGTGAGCAATTCCAATCTGATGGTCAGCGTTCTGGTGCCTGTTCAAGTGAAGATGTATGGTCTCATGCAACAAATACATCTCTGGAAACAAATTCCAAGAGAGATGCAGATGGAATTCATCAGCCACAGAGAACCTCTTCACTGCGATCAACAGACAGCAACCTGTCATCCTTAAGATCTTACAATTCTGGTGGTTTAGTTGATTTTTTCTCAGAACCTGTCCAAGCTTCTGGATCCCTTCAGAACAGTGTTCCACAACCAGCTGGTCTGGGAAGTTCTGTTAGTTCAGATCTTCCCAAGGCACCAGTGGTACCTGAACCATTCTCTTTATCAGCTTCATCTGTTGATCTTTTTCAGTTGCCTGCTGCACCATCTCAGGCTACATCAGTGGATCTGTTTCAATCACCTGTTTTATCTGCAGTTCCATCTTTCAACGAGAGTCAACCCACGCAAACATCCCAAGTCTCATCTGTTGACTTCTTTATGGATCTTTCTCAGCAGCCATCTGCTGCAAATTCAAATGAGAAATCACTAGAATCATCCATCCCTAAAAATGAAGGATGGGCAACATTTGATACTCCTCAGCTCACAACATCTAGTGCACAAGTAGAAATTCCAGCATCATTACCTTCAACTGCTGACTTTTTGCAGGAAAGATTTGATCCATTTTCGAACTTAAATGCAAATGTGCAATGGCCCACAACATCTAGTGCACAAGTAGAAATTCCAGTAGCATTACCTTCAACTGCTGACTCTTTGCAGGAAAGATTTGATCCATTTTCGAACTTAAATGAAAATATGCAATGGCCATCTTTTGAAACGTCTAGTATCAATGTTCCTTCTTCAGCTACATCTAATTTATGGCATGATGGTGTGTGGAATGGAGAACAGGTTTCTGTTACAGCAACAAACACTCAAGGATCCAATAAAGGTGGGATGCAAGACATTGCCCCTGTTGATGGGTTTGATAATCATGATCTCTCATCACATTTTGTTAGTGGCTCACCAAATCCTCCATCTGCATTTCATCAGATGGGAGAGGTTCAACCAAACAAAATCAACCATAAATCAACTAATCCATTTGATTATCCTGATGATTCTGACCTAGAGCACAATAATATGTGTCAATTGCAATTCCTTGATATCAGCTCTCTGAAAGCTGCTCTGCCAGATTCCCAGTCACCACCCACATTCCATAATGGTATTGTTGAACCTTGGCTCCCTCAAAATTCAGTGAACCCTTATATTTCCTCTGCAGGACAAGGTGGTTTGACATTCATGGCTGCACAACCACCAAGTTCTCAAATACCGAACGTCCAGACGCTGGGACCAGTTGCTTCTGTAGGGGGCAATCCCTTTGGATAG	2283	0.4196	MLDMSPNMLFETIQAYVDNDDDDVCCATTSMSICVMHTGRRMALKELLLLLLLLLPLRNANSDRTPPPKLSSIFRVIVSEMGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCTTCSGIHREFTHRVKSVSMSKFTSQEVDALQNGGNQRARDIYLKNWDFQTQRLSDSSNVDKIREFIRNVYVDRRYAAAKSSDKPPRDMQSPRIHEDDTRRASSYHSYSQSPPYDYQYEDRRYGKQVAALTRKPGSDKVRYEGKISSIIYSPGRFSDHAYDDRVANEGSGPRISDFSVSNGGEQFQSDGQRSGACSSEDVWSHATNTSLETNSKRDADGIHQPQRTSSLRSTDSNLSSLRSYNSGGLVDFFSEPVQASGSLQNSVPQPAGLGSSVSSDLPKAPVVPEPFSLSASSVDLFQLPAAPSQATSVDLFQSPVLSAVPSFNESQPTQTSQVSSVDFFMDLSQQPSAANSNEKSLESSIPKNEGWATFDTPQLTTSSAQVEIPASLPSTADFLQERFDPFSNLNANVQWPTTSSAQVEIPVALPSTADSLQERFDPFSNLNENMQWPSFETSSINVPSSATSNLWHDGVWNGEQVSVTATNTQGSNKGGMQDIAPVDGFDNHDLSSHFVSGSPNPPSAFHQMGEVQPNKINHKSTNPFDYPDDSDLEHNNMCQLQFLDISSLKAALPDSQSPPTFHNGIVEPWLPQNSVNPYISSAGQGGLTFMAAQPPSSQIPNVQTLGPVASVGGNPFG*	761

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g02575	760	PRINTS	HIV Rev interacting protein signature	140	161	IPR001164	GO:0005096
	Rops8g02575	760	PRINTS	HIV Rev interacting protein signature	122	139	IPR001164	GO:0005096
	Rops8g02575	760	PRINTS	HIV Rev interacting protein signature	103	122	IPR001164	GO:0005096
	Rops8g02575	760	MobiDBLite	consensus disorder prediction	347	361	-	-
	Rops8g02575	760	SMART	arf_gap_3	91	209	IPR001164	GO:0005096
	Rops8g02575	760	MobiDBLite	consensus disorder prediction	383	399	-	-
	Rops8g02575	760	MobiDBLite	consensus disorder prediction	383	404	-	-
	Rops8g02575	760	MobiDBLite	consensus disorder prediction	202	228	-	-
	Rops8g02575	760	PANTHER	ARFGAP/RECO-RELATED	81	760	IPR044820	GO:0005096
	Rops8g02575	760	MobiDBLite	consensus disorder prediction	293	361	-	-
	Rops8g02575	760	SUPERFAMILY	ArfGap/RecO-like zinc finger	89	202	IPR037278	-
	Rops8g02575	760	Pfam	Putative GTPase activating protein for Arf	92	204	IPR001164	GO:0005096
	Rops8g02575	760	FunFam	Arf-GAP domain and FG repeat-containing protein 1	80	214	-	-
	Rops8g02575	760	MobiDBLite	consensus disorder prediction	297	338	-	-
	Rops8g02575	760	CDD	ArfGap_AGFG	91	203	-	-
	Rops8g02575	760	MobiDBLite	consensus disorder prediction	202	244	-	-
	Rops8g02575	760	Gene3D	Arf GTPase activating protein	80	212	IPR038508	-
	Rops8g02575	760	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	91	209	IPR001164	GO:0005096
	Rops8g02575	760	MobiDBLite	consensus disorder prediction	474	493	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g02575	Rops-Chr8	58853167	58868798	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g02575	94	168	C2H2 Transcription Factor Family	AT4G05330	37.975	2.56e-11	63.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g02575	K15044		-	gmx:100817495	946.806