Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02569 ATGGTAGCATGGTGGAAGTTGTCACTTGATGATTTATCACAAATCATGCAGTTAATACAGCCAAATGGGGATTTGACTTTGAAAACTGATTCAATTAAGCTTTGGAGCACTTGCTTGGTTCCCAAATTCAAAATGGCTATAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTTGACAAATTGGGTGGTGCATTTGCTCCTAAGCCCTCTTCTGGACCACACAAATCAAGGGAATGCCTCCCACTCATACTCATCTTGCGAAACCGGCTGAAGTATGCTCTGGCATACCGGGAAGTGATTGCTATTCTGATGCAGCGCCATGTCCTTGTTGATGGCAAAGTCAGGACAGACAAGACTTATCCAGCTGGTTTCATGGATGTTGTGTCAATCCCTAAAACAAATGAGAACTTTCGCCTGCTTTATGACACTAAAGGCCGATTCCGTCTCCACTCAGTCAGGGATGAGGAGGCAAAGTTTAAGCTCTGCAAGGTTCGGTCAGTGCAGTTTGGGCAAAAGGGTATCCCATACCTGAACACCTATGATGGTCGCACCATCCGCTACCCAGACCCTCTCATCAGGGCTAATGACACCATTAAGCTGGATCTGGAGGAAAACAAGATTGTTGATTTCATCAAATTTGATGTTGGGAATGTAGTTATGGTAACAGGTGGACGGAATAGGGGACGTGTTGGAGTGATCAAGAATAGGGAGAAGCACAAGGGAAGCTTTGAGACAATCCACGTTCAAGATGCAATTGGGCGTGAATTTACAACTCGTTTGGGCAATGTGTTCACTATTGGCAAAGGGAACAAACCATGGGTATCTCTTCCCAAAGGTAAGGGTATTAAGCTCACAGTCATTGAGGAAGCTAGGAAAAGGATTGCCACCCAACAAGCAGCTTCTGCTTAA 927 0.4509 MVAWWKLSLDDLSQIMQLIQPNGDLTLKTDSIKLWSTCLVPKFKMAIGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALAYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAIGREFTTRLGNVFTIGKGNKPWVSLPKGKGIKLTVIEEARKRIATQQAASA* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02569 308 ProSitePatterns Ribosomal protein S4e signature. 52 66 IPR018199 -
Rops8g02569 308 FunFam 40S ribosomal protein S4 166 216 - -
Rops8g02569 308 CDD S4 95 156 - -
Rops8g02569 308 FunFam 40S ribosomal protein S4 45 161 - -
Rops8g02569 308 FunFam 40S ribosomal protein S4 219 289 - -
Rops8g02569 308 SMART s4_6 86 150 IPR002942 GO:0003723
Rops8g02569 308 Pfam S4 domain 92 134 IPR002942 GO:0003723
Rops8g02569 308 Pfam KOW motif 221 254 IPR005824 -
Rops8g02569 308 Gene3D - 45 161 IPR036986 GO:0003723
Rops8g02569 308 Pfam RS4NT (NUC023) domain 48 83 IPR013843 -
Rops8g02569 308 Gene3D - 219 289 IPR014722 -
Rops8g02569 308 ProSiteProfiles S4 RNA-binding domain profile. 103 148 - -
Rops8g02569 308 Pfam Ribosomal family S4e 139 213 IPR013845 -
Rops8g02569 308 Pfam 40S ribosomal protein S4 C-terminus 256 302 IPR032277 -
Rops8g02569 308 Gene3D - 166 216 IPR038237 -
Rops8g02569 308 Hamap 30S ribosomal protein S4e [rps4e]. 51 282 IPR000876 GO:0003735|GO:0005840|GO:0006412
Rops8g02569 308 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 46 298 IPR000876 GO:0003735|GO:0005840|GO:0006412
Rops8g02569 308 SMART kow_9 218 245 IPR005824 -
Rops8g02569 308 CDD KOW_RPS4 219 273 IPR041982 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02569 Rops-Chr8 58792919 58799230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02569 45 306 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 90.840 0.0 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02569 K02987 - gmx:100795220 488.034