Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02566 ATGGGGAGACCTCCTTGCTGTGACAAAGTTGGCATCAAGAAGGGTCCATGGACACCTGAGGAGGATATCATCCTTGTCTCTTACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGGCTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGGTGGACAAATTACCTCAGGCCAGGAATCAAGAGAGGGAATTTCACTCCTCATGAAGAAGGAATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGATAATGATATAAAGAATTATTGGAACACACATCTAAAGAAGAAGCTGAAGAAATTCCAAGCAGCCTTAGAGCCTAACCAAGCATCAGACTCAACAACCACCACTGGTCAGTATCTATCCAAGAGCTTCAGTGACAGAAGTTTAGATATCAGCAGCAACCATGCCTCATCCCTTTGGCTTAGTCATTCTCAGTCCTCAACATATGCCTCAAGCACTGAGAATATCTCAAGGCTCTTAGAAGGTTGGATGAGATCTTCTCCAAAACCACTCAAAGGAAACCAAGATGAAGAAGAGCTTCAAAGCAACCACAACTTTGAAAGTGGTAAGCTAGTGAGGTCTGCTTCAGTGCCTGCTTTAAACCTTCAACTTCAGCGCAAAACCAAAGATGAACAAGATATGATGTCCCATGAAGAGTTTGATTCTATTCTGTCTTTTGAGAACCTAAACAATGCTACTTGGGACAGGTCTACTTGTGATTCTATGCCAGAGAAGAGTTCTAAAGCTGCTGCTGCTGATGACAAGAATAATAGGCAAAAATCTGAGAATAACGATGCTCCTCCATTGTCATTTCTTGAGAAGTGGCTCTTGGATGAAAGTGTTGGTCAAGTTGAGGAGATGATGGAATTATCTCCTATGTTCTAA 942 0.4257 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALEPNQASDSTTTTGQYLSKSFSDRSLDISSNHASSLWLSHSQSSTYASSTENISRLLEGWMRSSPKPLKGNQDEEELQSNHNFESGKLVRSASVPALNLQLQRKTKDEQDMMSHEEFDSILSFENLNNATWDRSTCDSMPEKSSKAAAADDKNNRQKSENNDAPPLSFLEKWLLDESVGQVEEMMELSPMF* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02566 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops8g02566 313 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops8g02566 313 FunFam Transcription factor MYB60 68 138 - -
Rops8g02566 313 CDD SANT 69 112 IPR001005 -
Rops8g02566 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Rops8g02566 313 CDD SANT 16 61 IPR001005 -
Rops8g02566 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Rops8g02566 313 MobiDBLite consensus disorder prediction 266 280 - -
Rops8g02566 313 FunFam MYB-related transcription factor 13 66 - -
Rops8g02566 313 Gene3D - 69 138 - -
Rops8g02566 313 MobiDBLite consensus disorder prediction 254 288 - -
Rops8g02566 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 234 - -
Rops8g02566 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops8g02566 313 Gene3D - 13 66 - -
Rops8g02566 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops8g02566 313 SMART sant 66 114 IPR001005 -
Rops8g02566 313 SMART sant 13 63 IPR001005 -
Rops8g02566 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02566 Rops-Chr8 58771537 58773235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02566 1 137 MYB Transcription Factor Family AT5G62470 81.159 1.44e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g02566 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02566 K09422 - gmx:100817854 456.832