Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02563 ATGGATTTTTTGCAAACACCAGAAAATCAGATAATTGTGGGTGTGGCTGTGGCTGTTGTAGCCATTGGGGTTGGTGCTGTCTATCTCTTTTCATCTAAGAAGCCCAAAGGTTGCTTGGACCCGGAGAATTTCAAGGAGTTTAAACTTGTCAAGCGAGCACAGCTGAGCCATAATGTTGCGAAGTTCACATTTGCACTCCCAACACCTACTTCTGTTTTGGGTCTTCCAATTGGCCAACACATAAGTTGCAGGGGTAAGGATGCCCAGGGTGAAGATGTTATCAAACCATATACCCCTACAACTTTGGATTCTGATGTGGGACATTTTGAACTGGTTATTAAGATGTACCCACAAGGAAGGATGTCACACCATTTCCGTGAGATGCGTGTTGGTGACTATCTTGCTGTAAAAGGACCCAAGGGACGTTTCAAGTACCAACCTGGTGAGGTTAGAACATTTGGGATGCTTGCTGGGGGGTCTGGAATCACTCCAATGTTCCAAGTTGCTAGAGCTATATTGGAAAACCCTGAAGACAGGACCAAGGTGCATCTTATCTATGCCAATGTTACATATGAGGACATTCTTTTAAAGGAAGAACTTGATGGTCTTGCTACCAACTATCCGGATCAGTTCAAAATATACTATGTGTTAAATCAGCCTCCTGAAGTATGGAATGGTGGTGTTGGATTTGTATCAAAGGAGATGATTGAAACCCATTGCCCTCCTCCAGCACATGATATTAAGATATTGAGATGTGGGCCACCACCAATGAGCAAGGCCATGGCTGCTCACCTTGATGCCATTGGATATGCTCCTGAGATGCAGTTCCAGTTCTGA 837 0.4432 MDFLQTPENQIIVGVAVAVVAIGVGAVYLFSSKKPKGCLDPENFKEFKLVKRAQLSHNVAKFTFALPTPTSVLGLPIGQHISCRGKDAQGEDVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFKYQPGEVRTFGMLAGGSGITPMFQVARAILENPEDRTKVHLIYANVTYEDILLKEELDGLATNYPDQFKIYYVLNQPPEVWNGGVGFVSKEMIETHCPPPAHDIKILRCGPPPMSKAMAAHLDAIGYAPEMQFQF* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02563 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 192 203 IPR001709 GO:0016491
Rops8g02563 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 154 173 IPR001709 GO:0016491
Rops8g02563 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 248 256 IPR001709 GO:0016491
Rops8g02563 278 Pfam Oxidoreductase FAD-binding domain 47 145 IPR008333 -
Rops8g02563 278 PRINTS Cytochrome B5 reductase signature 192 203 - -
Rops8g02563 278 PRINTS Cytochrome B5 reductase signature 248 256 - -
Rops8g02563 278 PRINTS Cytochrome B5 reductase signature 154 173 - -
Rops8g02563 278 PRINTS Cytochrome B5 reductase signature 73 84 - -
Rops8g02563 278 PRINTS Cytochrome B5 reductase signature 95 102 - -
Rops8g02563 278 PRINTS Cytochrome B5 reductase signature 131 145 - -
Rops8g02563 278 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 134 274 IPR039261 -
Rops8g02563 278 FunFam NADH-cytochrome b5 reductase 37 136 - -
Rops8g02563 278 CDD cyt_b5_reduct_like 47 278 - -
Rops8g02563 278 SUPERFAMILY Riboflavin synthase domain-like 38 147 IPR017938 -
Rops8g02563 278 Gene3D - 137 278 IPR039261 -
Rops8g02563 278 FunFam NADH-cytochrome b5 reductase 136 278 - -
Rops8g02563 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 33 278 IPR001834 GO:0016491
Rops8g02563 278 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 146 IPR017927 GO:0016491
Rops8g02563 278 Pfam Oxidoreductase NAD-binding domain 155 261 IPR001433 GO:0016491
Rops8g02563 278 Gene3D Translation factors 37 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02563 Rops-Chr8 58743424 58748740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02563 2 278 NADPH P450 reductases AT5G17770 84.173 2.99e-170 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02563 K00326 - gmx:100816447 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02563 8 58743424 58748740 Rops8g02563 8 58743424 58748740 ECH