Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02556 ATGGGTTCACAGAACTTCAACAATGGGGTTGAAGGTTTTAGTGGAGATGTGAATTTTTTCCCTTCAGCTCCTCTTCCTTCTTCTCTTCTTGTGGGTTCCCAAGATCCTTCTTTGTCTAAGACTATAGGGGTTATGGGTCATGCTGGTGGGGTAGAGGATCAAAAGCCTGAAATGGAACTTCAGATTTTGAATCCCTCAATGTTACGGCCCCAACAGAGTAAGGGAAAAGAGAGAACCAATGGTGAAGGAGATGGGTTCTTTGGAGATGAGAACAAGGACTTGTCTTTGAAACTTGGGGATGAAGTAGAAGCTAATAGCTCTTCTGCTGGGAAAATTGGGTACACTAAGCTCTGTGCTAGAGGCCACTGGAGGCCAGCTGAAGATGCAAAACTTAAGGAACTTGTTGCTCAATATGGTCCTCAAAATTGGAACTTGATTGCTGAGCAACTTGAAGGAAGATCAGGCAAAAGTTGCAGATTGAGGTGGTTCAATCAGCTAGACCCTAGAATCAACAGGAGGCAATTTTCTGAGGAGGAAGAGGAGAGGCTCTTAGCTGCTCATAAAATATATGGTAACAAATGGGCTATGATTGCTAGACTCTTTCCTGGAAGGACAGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCACAGGGAGCAGTCTAGTGTGTATAAAAAGAGAAAGAGCATTGTTGAAAGCCTTCCAGACGGTTTAAAATTGACTCTTTCTAACAATGCAGCCAGTGAATCAACCATCTCAAGCACCATAGATGAATCTGCCTCAACTTGCACTAACCTTTCCCTCACTCCCTCTTCAGCTAAACTAACTCCTAGAGTTTTTGATAAACTGAGTCCAGTTCAGAATCACCAAGGCTATGGATCAATAATGGTTCAATCTAGAGAAAGTGGGTTGGTGGCAACGGGGAATGTGAGTTTTGAGAAGCTTTTTGGTGCTTGGAACGGCACATGTAAGCCAGAACCTGTGGGAAAGCTCATGGAAGTGGTGGACCAGTCCAATTTTTCAGATTCAAACTCAGAAGTTTCAGTATCTGAGTCAGTTGCCACCACCAATAGGTCCAATCTCTCAATTTCTGGGGAAAGAGAAAACGTGGGTGATGATAAGATTAACATGCCATTCATTGATTTTCTTGGAGTAGGAGCTATATAG 1179 0.4334 MGSQNFNNGVEGFSGDVNFFPSAPLPSSLLVGSQDPSLSKTIGVMGHAGGVEDQKPEMELQILNPSMLRPQQSKGKERTNGEGDGFFGDENKDLSLKLGDEVEANSSSAGKIGYTKLCARGHWRPAEDAKLKELVAQYGPQNWNLIAEQLEGRSGKSCRLRWFNQLDPRINRRQFSEEEEERLLAAHKIYGNKWAMIARLFPGRTDNAVKNHWHVIMARRHREQSSVYKKRKSIVESLPDGLKLTLSNNAASESTISSTIDESASTCTNLSLTPSSAKLTPRVFDKLSPVQNHQGYGSIMVQSRESGLVATGNVSFEKLFGAWNGTCKPEPVGKLMEVVDQSNFSDSNSEVSVSESVATTNRSNLSISGERENVGDDKINMPFIDFLGVGAI* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02556 392 MobiDBLite consensus disorder prediction 75 90 - -
Rops8g02556 392 CDD SANT 123 164 IPR001005 -
Rops8g02556 392 PANTHER MYB PROTEIN-RELATED 120 264 - -
Rops8g02556 392 SMART sant 119 168 IPR001005 -
Rops8g02556 392 SMART sant 171 219 IPR001005 -
Rops8g02556 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 166 IPR017930 -
Rops8g02556 392 CDD SANT 183 214 IPR001005 -
Rops8g02556 392 Gene3D - 173 237 - -
Rops8g02556 392 FunFam MYB transcription factor 173 240 - -
Rops8g02556 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 167 221 IPR017930 -
Rops8g02556 392 SUPERFAMILY Homeodomain-like 120 213 IPR009057 -
Rops8g02556 392 Gene3D - 120 171 - -
Rops8g02556 392 FunFam MYB transcription factor 120 171 - -
Rops8g02556 392 ProSiteProfiles Myb-like domain profile. 167 217 IPR001005 -
Rops8g02556 392 MobiDBLite consensus disorder prediction 68 90 - -
Rops8g02556 392 Pfam Myb-like DNA-binding domain 123 183 - -
Rops8g02556 392 ProSiteProfiles Myb-like domain profile. 120 166 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02556 Rops-Chr8 58607833 58610196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02556 119 392 MYB Transcription Factor Family AT1G69560 45.620 1.49e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g02556 Myb_DNA-bind_6 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02556 K09422 - gmx:100791795 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02556 8 58607833 58610196 Rops8g02556 8 58607833 58610196 ECH