Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02555 ATGGAAGATCAGGGGCAGCAGGACCCAAACAGTCCAAGCCATGGTTCCGAGAAAAGTGAACCAGTTAGGTCAAGGTGGACTCCAAAACCTGAACAAATCCTCATACTTGAGTCCATCTTCAACAGTGGTATGGTGAATCCACCTAAGGAAGAAACCGTCAGAATAAGAAAGCTTCTTGAGAAATTTGGCACCGTTGGTGATGCCAATGTTTTCTACTGGTTCCAGAATCGCCGGTCAAGATCTCGCCGCCGGCAACGCCAGATGCAACAAGCCACCCTTGAACAAAGAAACCAGATGATGCAAACACACCCTCATCAAGTTGATGGTGCAATTCAAAATCATACTACCAACCCAGTTGCTGCAACCATGGGTTTTGGTTCTTCTTCTTCTTCTTCTTCTTCTTGCACTGCTGGTTCCTCTTCTCCTTCATGTGGTGTTGGTCAACAAGGCATGGATGGTTTCATTTCAGTTTCTCCTCAAATGGGTTACCCTGGAATTGATCAAACTTCAGCTGCATCATCATCAGTTTTGTACCCTACTTTTGTTGCTCCCAATTTGAACTACCACTCTGGCTATGGGGGTGCTAATGTTTCAGGATTCATCACTGTGTTTGTCAATGGGATTGCAACAGAACTTCAAGGAGGGCCAATAGATATCAAAACAGTGTTTGGTGAAGATGTAATGTTAGTTCATTCCTCTGGAGTGCCAGTGCCCACAAATGAATTTGGGTTCTTGATGCAGAGTTTGCAGCATGGTGAAAGCTACTTTCTGGTTGGAACATATCCCATATATCTTCAAATCAGTTGTTTCTATTCTAAATCTTGTGTTGTCACTCTTGATTCCTTGCTTCTTCTTCTTTTTTTCCTTTTCCCCCTTTAG 879 0.4357 MEDQGQQDPNSPSHGSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQMQQATLEQRNQMMQTHPHQVDGAIQNHTTNPVAATMGFGSSSSSSSSCTAGSSSPSCGVGQQGMDGFISVSPQMGYPGIDQTSAASSSVLYPTFVAPNLNYHSGYGGANVSGFITVFVNGIATELQGGPIDIKTVFGEDVMLVHSSGVPVPTNEFGFLMQSLQHGESYFLVGTYPIYLQISCFYSKSCVVTLDSLLLLLFFLFPL* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02555 292 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Rops8g02555 292 Pfam Homeodomain 23 83 IPR001356 GO:0003677
Rops8g02555 292 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 259 IPR044558 GO:0003700|GO:0048830
Rops8g02555 292 FunFam WUSCHEL-related homeobox 11 23 90 - -
Rops8g02555 292 MobiDBLite consensus disorder prediction 1 17 - -
Rops8g02555 292 SMART HOX_1 21 88 IPR001356 GO:0003677
Rops8g02555 292 Gene3D - 7 102 - -
Rops8g02555 292 MobiDBLite consensus disorder prediction 1 28 - -
Rops8g02555 292 SUPERFAMILY Homeodomain-like 15 90 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02555 Rops-Chr8 58578548 58580209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02555 7 258 Wox Gene Family AT3G03660 49.438 3.99e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops8g02555 Homeodomain 5.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02555 - - lang:109335690 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02555 8 58578548 58580209 Rops8g02555 8 58578548 58580209 ECH