Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02554 ATGAAGTTCATCATTCTAATCTTCTTCTTTGTTCTTCCCTTTGCATTTGGTGATCTCAGGGTTGGATTCTATAGCTCCAGTTGCCCAAGAGCTGAGGACATTGTACGTCAAGTTGTTCAGATGAGTTTCAACAGGGATAGATCCATCACCGCTGGCTTGCTTCGCATGCACTTTCATGACTGCTTTGTCAGGGGGTGTGACGCATCCATATTAATAGATTCAACAAGGGGCAATAGATCAGAGAAAGCTGCAGGACCAAACCAAACAGTTAGGGGATACGAACTGATTGATTTGATCAAGAGAACCTTAGAAAACACTTGCCCTTCAACAGTTTCATGTGCAGATATCATAGCACTAGCCACAAGAGATTCAGTGGCCATGGCAGGTGGACCCACATACAATGTCCCCACTGGAAGACGTGATGGGTTAATATCCAACCCTTCTGAAGTTGACCTTCCAGGACCAGGTTCCACTGTGCCACAAGCATTGCAAAGTTTCACAGCAAAAGGCATGACATTGAACGAAATGGTTACCCTTTTAGGAGCACACACAGTTGGTTTTACTCACTGCAGTTTCATTCGTAATAGGCTCTCTGATCCTTCAATGGACCCTTCTTTGCGTGCTAAGTTGGTGCGTTTATGTGGAACTAGGCCTACAAGGAATGATCCCACTGTGTTTTTGGATCAAAACACTTCATTTGCATTTGATAACCAGTTCTATAACCAAATGCTTTTGAATAGAGGGGTGCTTTTCCTTGATCAGCAGCTGGCTCTGGATCCTTCCTCTAAAGGGTTGGTCTCAAATTTTGCAGGAAATGATGCAAGTTTTAGGGGAAGCTTTGTTGATGCTATGGTCAAGATGGGAAGCATTGATGTTTTGGTGGGAAATGATGGAGAGATTAGGAAAAATTGCAGGGTTTTTAATAGGCGTTCATAG 936 0.4348 MKFIILIFFFVLPFAFGDLRVGFYSSSCPRAEDIVRQVVQMSFNRDRSITAGLLRMHFHDCFVRGCDASILIDSTRGNRSEKAAGPNQTVRGYELIDLIKRTLENTCPSTVSCADIIALATRDSVAMAGGPTYNVPTGRRDGLISNPSEVDLPGPGSTVPQALQSFTAKGMTLNEMVTLLGAHTVGFTHCSFIRNRLSDPSMDPSLRAKLVRLCGTRPTRNDPTVFLDQNTSFAFDNQFYNQMLLNRGVLFLDQQLALDPSSKGLVSNFAGNDASFRGSFVDAMVKMGSIDVLVGNDGEIRKNCRVFNRRS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02554 311 PANTHER PEROXIDASE 25-RELATED 8 296 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 SUPERFAMILY Heme-dependent peroxidases 18 308 IPR010255 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 Pfam Peroxidase 35 271 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 ProSiteProfiles Plant heme peroxidase family profile. 18 308 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 Gene3D Peroxidase, domain 2 153 287 - -
Rops8g02554 311 FunFam Peroxidase 22 154 - -
Rops8g02554 311 ProSitePatterns Peroxidases proximal heme-ligand signature. 175 185 IPR019793 -
Rops8g02554 311 PRINTS Haem peroxidase superfamily signature 228 243 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 PRINTS Haem peroxidase superfamily signature 175 190 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 PRINTS Haem peroxidase superfamily signature 129 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 PRINTS Haem peroxidase superfamily signature 111 128 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 PRINTS Haem peroxidase superfamily signature 50 64 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 Gene3D - 22 308 - -
Rops8g02554 311 PRINTS Plant peroxidase signature 226 241 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 PRINTS Plant peroxidase signature 91 104 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 PRINTS Plant peroxidase signature 28 47 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 PRINTS Plant peroxidase signature 52 72 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 PRINTS Plant peroxidase signature 110 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 PRINTS Plant peroxidase signature 129 144 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 PRINTS Plant peroxidase signature 174 186 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 PRINTS Plant peroxidase signature 242 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 PRINTS Plant peroxidase signature 282 295 IPR000823 GO:0004601|GO:0006979|GO:0020037
Rops8g02554 311 ProSitePatterns Peroxidases active site signature. 50 61 IPR019794 GO:0004601
Rops8g02554 311 FunFam Peroxidase 153 287 - -
Rops8g02554 311 CDD secretory_peroxidase 19 307 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02554 Rops-Chr8 58543561 58545036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02554 1 308 Peroxidase AT4G26010 58.013 8.89e-128 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02554 K00430 - gmx:100820340 441.039