Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02551 ATGTCTGAGACTGAGAAGGATTCAGGTATCAAGCTATTTGGCATGAAGATTCCGGTGCCGGAATGTCAGATTCCGGCCAACTCTGGACCCATGGATGCTTGCAGCAGCACAAAGAAAATCGAAGTGGAAGTACCTTGTGCAGAAAACTCTGAGCAACAAGAGAATTCTTCTGATTTAAGGGATAGTAAACAAGAGTCCCAACCTAATGTGCAGGAAAGTGAGCCAATAGTAAATTCCAAGCCTGTGGAAGATACTTCTGAGACTGGTAATACAGATCAAAATAAATTATTGAAGAAACCAGACAAGATTCTTCAGTGTCCGCGATGCAACAGTTTGGACACCAAGTTTTGTTATTTCAATAACTATAATGTTAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGTGCTGGGAGGCGGAAGAATAAGCACCTAGCCTCTCAATACCGGCACATTATAGTAACCTCTGATGGAATTCCAACCTCCAGGCTGGAAACCACTGGCTCATCTGGTCACCAACATATCTCAAGTCTTGATTCCTCAGTTGCTTTCAGGTCTTCAACAGATAGTGGAACAGTATTGAAATTTGGTCCAGATACCCCTCTCTGTGAGTCAATGGAATCAATGCTTAATCTTAGAGACCGGAAAAGAAGTGCTGATGCAAGTACTATCAGTTGTGCAGATGGAGAGGAACCATCCTTATGTGGTTCTTCTGTGACAAATTCTGGTACTCAAGGAAATGAATTATCAGAACAAAACACATCAAATTTGTTGCAGTGTTACCCTGTTCCTCCATGGGTATTACCATGGAATCCAGGATGGAATAATGTTGCTTCCATGGCAGCAGTTCCTCAGTCTTCAGCACCCATGTGTAACCCATATAGCACTGGTCCCACTGCAATGCAATGGTGTCCCACACCAATGGTGGCAATTCCAAGCATTTGCCCACCAAACATTCCTTTGCAATTTGTATCTGCATCATACCGGAATGGAACACCATTTTGGGCTGCTGGAAATGGGACAGTATCAATAGGACCCAACCCTTGCCTTTCACCTTCTTCCTCCACTAGTAACAGTTGCATCTCAGGCAATGGCTCCCCAACCTTAGGCAAACACACTAGAGATACAGTTTTCACTGATGAAGAGAAATCAGAGAAGTGTATTTTGGTTCCAAAGACCATTAGAATTGAATACCCAAATGAGGCCTCAAAAAGTCCTATAAGGGCTACATTAGCTATCAAGCCTGATAAACAACAATCTGTATCAAATGGTGATGTTTTGAAAAAAGTAGAAACCAAAGGAGAAGGCATAGACCGTGTATTGGGTGCCTCTCAAATCTTGGAAGCCAACCCAGTAGCTATTTCTCGTGCTCATGCATTCCAGGAGAGCATATAA 1437 0.4301 MSETEKDSGIKLFGMKIPVPECQIPANSGPMDACSSTKKIEVEVPCAENSEQQENSSDLRDSKQESQPNVQESEPIVNSKPVEDTSETGNTDQNKLLKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHIIVTSDGIPTSRLETTGSSGHQHISSLDSSVAFRSSTDSGTVLKFGPDTPLCESMESMLNLRDRKRSADASTISCADGEEPSLCGSSVTNSGTQGNELSEQNTSNLLQCYPVPPWVLPWNPGWNNVASMAAVPQSSAPMCNPYSTGPTAMQWCPTPMVAIPSICPPNIPLQFVSASYRNGTPFWAAGNGTVSIGPNPCLSPSSSTSNSCISGNGSPTLGKHTRDTVFTDEEKSEKCILVPKTIRIEYPNEASKSPIRATLAIKPDKQQSVSNGDVLKKVETKGEGIDRVLGASQILEANPVAISRAHAFQESI* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02551 478 MobiDBLite consensus disorder prediction 248 264 - -
Rops8g02551 478 ProSitePatterns Zinc finger Dof-type signature. 106 142 IPR003851 GO:0003677|GO:0006355
Rops8g02551 478 PANTHER CYCLIC DOF FACTOR 2 1 477 IPR045174 GO:0003700|GO:0006355
Rops8g02551 478 MobiDBLite consensus disorder prediction 237 264 - -
Rops8g02551 478 MobiDBLite consensus disorder prediction 45 96 - -
Rops8g02551 478 ProSiteProfiles Zinc finger Dof-type profile. 104 158 IPR003851 GO:0003677|GO:0006355
Rops8g02551 478 MobiDBLite consensus disorder prediction 68 93 - -
Rops8g02551 478 Pfam Dof domain, zinc finger 101 158 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02551 Rops-Chr8 58484644 58487497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02551 7 477 C2C2-Dof Transcription Factor Family AT5G39660 33.459 8.57e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops8g02551 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02551 - - gmx:100813787 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02551 8 58484644 58487497 Rops8g02551 8 58484644 58487497 ECH