Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02547 ATGGTGTACTGTGGTCACTGTGCCAAAAACGTTACCGGTGAACGACTTGACGACGGTTACTTATGTTGTAGACACTGTGGGAGGGTGTTGGAAGATCAGTATTTTTCTCAGGAGCCTACTTTTGTTAAAAATTCGGCAGGGCAGAGCAAATTATCGGGCAATTATGTAAGAACGATTCAAAGCGAGTTCTCTGCTTCTCGTCAAAGGACTTTAGATAGAGCTTATGATGAAATCAAATATTTAAGTTTCAACCTTGGTGTGAACGATGAAAATATGGCCAACCAAGCTTTGGCCTTCTATAAAATAGCGCTTGAGCGAAATTTCACCCGTGGACGTAAATCAGAGCAAGTACAGGCTGCTTGTCTCTATATTGCATTCCGGCAAAACAATAAGCCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAAATGTTTATGTGCTTGGAGCAGTTTTCTTGCAGCTTTGTAAAGTGTTAAGGCTTGAAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCTAGTCTTTTTATTTATAAATATACTAATAATTTGTTAAAGCAAAGGAATGTGGTTGTCTCTGAAACTGCACTGAACATTGTTGCAAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAACCTAGTGGATTATGTGGTGCAGCGTTATACATATCAGCTCTTGCACACGGTTTTAAGTGCTCTAAGCCAGATATTCTAAGAATAGTCCATGTATGTGAAGCAACATTGACCAAGCGTTTGGTAGAATTTAAGAATACAGACTCTTCTAGCCTGACAATTGAGGAGTTGAATACGATGGCAAAAGAGCGTGAAAAAAATCCAACTGTAATGCCAAACGGCAAACTCAATGAATCTACTTCAAAAGATGTACTATGCGAACACAAAGATAGTGGAGTTCCCTATTTTGCACTTGGATTATGTGAAACATGCTATAAGGATTTTGATAAGCTCTCGGGAGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGAGAGAGAATGAAAAAAACACTTTCTAAGTTGGTGAAAGCATCAAATGGTGCATGCAAGAGCCGGAAAGAAAATTTGCCTTCCTCTGTTCCAGAAAGGGATAATGTTGAGCACGGGATCGCTAAAGATGGTGAGTATGATGAGTCACATAGAGAAGATGATACCAGTGCAAAAACTCATGATGAATCCGAAAGTTTCTCTGATATCGATGATCAAGAGGTTGATGGGTACCTTCACAGTGAGGAGGAGCAGCATTACAAGAAAATAATATGGGAAAAAATGAACCGAGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAGCTGCCGCAGCTGCTAAGAAAGCTTTTGAGGCAAATTTTGAAAACTGTTCCGAGGATTTACTAGCAGCAAGGGAGCAGGCTGCATCTGTTGCTGCTGCTGTGGCAAAATCCAGAAAGGAAATGAAACAGAGACGAGCTCATGAGGCAAAAAATTCAGGGCCTGCTCAATCTGCAGCAGAGGCCACTCGCCAAATGTTGAAAACAAAGAGGCTCAGCTCCAAAGTCAATTATGATCGCCTGGCAAAATTATTTGATGAACCATTAGACGCGGATAATCCCAAGAAAGTACGATTTGATCTACCCTCTGGTAATCATGACAATTTTCAGTCCAAGGTTGAGGATAAAAAGGATGATGAGCTGGGATCAGCTGATGAATTTGAGGATGAAGGTGATATGGGGGGAATATATGAAAACACTTTGTATACTGAAAATATGGATCAGACATATTTCCCTGAGGATGATGGTTATAGTCATGATGATGATCATTACTAG 1836 0.409 MVYCGHCAKNVTGERLDDGYLCCRHCGRVLEDQYFSQEPTFVKNSAGQSKLSGNYVRTIQSEFSASRQRTLDRAYDEIKYLSFNLGVNDENMANQALAFYKIALERNFTRGRKSEQVQAACLYIAFRQNNKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIYKYTNNLLKQRNVVVSETALNIVASMKRDWMQTGRKPSGLCGAALYISALAHGFKCSKPDILRIVHVCEATLTKRLVEFKNTDSSSLTIEELNTMAKEREKNPTVMPNGKLNESTSKDVLCEHKDSGVPYFALGLCETCYKDFDKLSGGLGGGLDPPAFQRAERERMKKTLSKLVKASNGACKSRKENLPSSVPERDNVEHGIAKDGEYDESHREDDTSAKTHDESESFSDIDDQEVDGYLHSEEEQHYKKIIWEKMNREYLEEQAAKEAAAAAAKKAFEANFENCSEDLLAAREQAASVAAAVAKSRKEMKQRRAHEAKNSGPAQSAAEATRQMLKTKRLSSKVNYDRLAKLFDEPLDADNPKKVRFDLPSGNHDNFQSKVEDKKDDELGSADEFEDEGDMGGIYENTLYTENMDQTYFPEDDGYSHDDDHY* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02547 611 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Rops8g02547 611 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Rops8g02547 611 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Rops8g02547 611 Gene3D Single helix bin 399 450 - -
Rops8g02547 611 MobiDBLite consensus disorder prediction 353 415 - -
Rops8g02547 611 Pfam Brf1-like TBP-binding domain 408 533 IPR011665 -
Rops8g02547 611 FunFam Transcription factor IIIB subunit 173 262 - -
Rops8g02547 611 MobiDBLite consensus disorder prediction 539 611 - -
Rops8g02547 611 Pfam Transcription factor TFIIB repeat 170 260 IPR013150 GO:0017025
Rops8g02547 611 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Rops8g02547 611 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Rops8g02547 611 SUPERFAMILY Cyclin-like 172 264 IPR036915 -
Rops8g02547 611 SUPERFAMILY Zinc beta-ribbon 2 45 - -
Rops8g02547 611 Gene3D - 173 263 - -
Rops8g02547 611 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Rops8g02547 611 SMART cyclin_7 76 158 IPR013763 -
Rops8g02547 611 SMART cyclin_7 176 259 IPR013763 -
Rops8g02547 611 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 523 IPR000812 GO:0006352|GO:0070897
Rops8g02547 611 FunFam Cyclin/Brf1-like TBP-binding protein 400 450 - -
Rops8g02547 611 Gene3D - 64 165 - -
Rops8g02547 611 MobiDBLite consensus disorder prediction 488 511 - -
Rops8g02547 611 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Rops8g02547 611 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
Rops8g02547 611 MobiDBLite consensus disorder prediction 367 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02547 Rops-Chr8 58299797 58320869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02547 1 517 Inorganic Solute Cotransporters AT2G01280 42.486 1.55e-111 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02547 K15196 - gmx:100789154 838.95