Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02537 ATGGAGATGTACAACAACTCAGGAGGAGGTGGTAGAAACATGAGCATTCTAGCGTCACGGACGAGTTCACGGTCGGTGACGGAGACGGTGAACGGTTCACACAAGTTCGTTATAAAAGGTTACTCACTTGCAAAAGGCATGGGCGTTGGGAAACACATCGCGAGTGAAACCTTCACCGTTGGAGGGTACCAGTGGGCAATTTACTTCTACCCTGACGGTAAGAACCCCGAAGATAACTCCGCTTATGTCTCCGTTTTCATCGCTCTCGCTTCCGAAGGCACCGATGTTCGTGCACTATTTGAACTCACCTTACTCGATCAAAGCCCTAATGCGAAGCATAAAGTCCATAGTCACTTCGATCGATCCTTAGAAAGTGGTCCCTACACTCTCAAATACCGCGGCAGCATGTGGGGGTATAAGCGGTTTTTCAAACGGGCTCAACTTGAGGCGTCGACTTTCCTTAAGGATGATTGCTTGAAGATAAACTGCACTGTTGGTGTGGTCGTGTCGTCCATAGATTGTTCTAAATTGAACACCATACAGGTTCCTGAATCTGATATCGGAGCGCATTTCGGCATGCTGTTGGAGAATGAGGAAGGATCTGATGTTACTTTCTCTGTTGGTGGAGAAAGGTTTCCTGCACATAAGCTTGTTTTGGCTGCTCGGTCAACCGCTTTTGAAACTGAGTTTTTCAATGGGATGGAGGAAGATGATCGTGACATAGTTGTTACTGACATGGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACACTCTTATAGAAGATGACGAGCTCTTTATGTCGCGTTCATCATTCTTTCCTTCAATATCTGAAACATTTGCAGCAAAATTGTTAGCTGCTGCAGAAAAGTATGGTTTGCCAAGACTTAAGCTGATGTGCGAGTCTGTACTTTGCAAAGACATATCTATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGTTATCATGCTACGGAACTGAAATCCATCTGTCTGCAATTTTCTGCTGAAAACCTTGTTGCTGTGATGCAATCTGATGGTTTTGAGTATCTTAAGGAAAACTGTCCGTTGCTGCAATCAGAACTGCTAAAGACAGTGGCAGGATGTGAGGAGGAATTTAGTGGAGAAGGAAAATGTCGAAGAGTCCAGGGCAAGAAGCTTGATGAGGGATCGTTGAGACAAGTTAATGGGTTATTTGGTACACAAGACCAGCCTGCAGTTCTTCCCTTCACATTTTCCTTTTATTCTGTTAACATTTGTTTCTTGTTTCTTCTTTTTTTGGGAGAGGAGGGGAGAAGGGAGGGAAAGTGGATAGGCATCTTTGAACAACCAACAGGCAGTGTGGAAGTAGCACTTGCTGGTAGCTTGTTCATTTTGTAA 1395 0.4416 MEMYNNSGGGGRNMSILASRTSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSPNAKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNTIQVPESDIGAHFGMLLENEEGSDVTFSVGGERFPAHKLVLAARSTAFETEFFNGMEEDDRDIVVTDMEPKVFKALLHFIYRDTLIEDDELFMSRSSFFPSISETFAAKLLAAAEKYGLPRLKLMCESVLCKDISIDSVAYILALADRYHATELKSICLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRRVQGKKLDEGSLRQVNGLFGTQDQPAVLPFTFSFYSVNICFLFLLFLGEEGRREGKWIGIFEQPTGSVEVALAGSLFIL* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02537 464 SUPERFAMILY POZ domain 179 312 IPR011333 -
Rops8g02537 464 SUPERFAMILY TRAF domain-like 28 167 - -
Rops8g02537 464 Gene3D - 311 388 - -
Rops8g02537 464 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 30 169 IPR008974 GO:0005515
Rops8g02537 464 Gene3D Potassium Channel Kv1.1; Chain A 177 306 IPR011333 -
Rops8g02537 464 SMART math_3 36 148 IPR002083 GO:0005515
Rops8g02537 464 CDD BTB_POZ_BPM_plant 187 309 - -
Rops8g02537 464 FunFam BTB-POZ and math domain 1 177 306 - -
Rops8g02537 464 ProSiteProfiles BTB domain profile. 201 267 IPR000210 GO:0005515
Rops8g02537 464 CDD BACK_AtBPM-like 309 370 IPR034090 -
Rops8g02537 464 Pfam BTB/POZ domain 193 310 IPR000210 GO:0005515
Rops8g02537 464 SMART BTB_4 201 312 IPR000210 GO:0005515
Rops8g02537 464 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 21 368 IPR045005 GO:0016567
Rops8g02537 464 ProSiteProfiles MATH/TRAF domain profile. 31 165 IPR002083 GO:0005515
Rops8g02537 464 FunFam BTB/POZ and MATH domain-containing protein 4 30 169 - -
Rops8g02537 464 CDD MATH 32 165 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02537 Rops-Chr8 58057759 58066010 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops8g02537 BTB 1.2e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02537 K10523 - gmx:100818306 719.153