Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02535 ATGGCAGATCCACAAGTTGGTGCTGATCATGGCACTTCTAGAACTAGGCATAAAGGTACTGCTGCTCCATGTGGGGCATGCAAGTTCCTTAGAAGAAAGTGCATTAGTGGCTGCATATTTGCACCTTACTTTGGTTCAGACCAGGGTAAAGCTCGGTTTGCAGCTGTGCATAAAATGTTTGGTGCGAGCAATGTGTCCAAGCTCTTGTTGCATATTCCGGTGAACCGCCGTCATGAAGCGGTGGTTACTATATCCTACGAGGCTCAGGCAAGGTTGTCTGATCCGGTTTCTGGTTGTGTCTCCATTATTCTTGCTTTGCAGCAACAGGTGGCATCTTTGCAAGGGGAGCTTGCAATGGTACAAACTCAGCTGGTAAATTGTAGGTTTGCATATGCAAGTGTTCTTCAGCAACAACAACAGGAACCAAACATCAATGTAGTGCACTCTAACAACTCTTATGCTTCTACCAACATCCTCAACATGAGTTGCTTCAACCCTGGTTTTGACCTTGCAATGGAGACAGCACCCTCATCACACAGCTTGGAGCCTCTTCAACTGTCTTTGTTGTCCCAGGTGAGGAAGATGATGAGGAAAACAGCAGGATTCCCCAGCTTTCAACCATGA 624 0.4663 MADPQVGADHGTSRTRHKGTAAPCGACKFLRRKCISGCIFAPYFGSDQGKARFAAVHKMFGASNVSKLLLHIPVNRRHEAVVTISYEAQARLSDPVSGCVSIILALQQQVASLQGELAMVQTQLVNCRFAYASVLQQQQQEPNINVVHSNNSYASTNILNMSCFNPGFDLAMETAPSSHSLEPLQLSLLSQVRKMMRKTAGFPSFQP* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02535 207 MobiDBLite consensus disorder prediction 1 21 - -
Rops8g02535 207 Coils Coil 103 123 - -
Rops8g02535 207 PANTHER LOB DOMAIN CONTAINING PROTEIN 19 160 - -
Rops8g02535 207 ProSiteProfiles LOB domain profile. 22 124 IPR004883 -
Rops8g02535 207 Pfam Lateral organ boundaries (LOB) domain 23 121 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02535 Rops-Chr8 58024596 58025705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02535 22 184 AS2 family AT3G03760 64.246 3.20e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops8g02535 LOB 1.1e-36 No_clan