Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02520 ATGGACAGGCTCATAAGATTAGACCCATCAAACATAGTCCCAATAAGAATAGAACAAGGGCAAAAATGTCACGGCCAAATCACCTTACGCAATGTTATGTACACCATGCCAGTGGCCTTCAGGCTTCAACCATTGATCAAGACACGTTACACAGTGAAACCCCATTCAGGTATCATATCCCCTTTGGCCACACTCACCATAGAGATCATTTATCACCTCCCACAAGGCTCAAATCTCCCTCACTCTTTCCCTCACTCCGACGACTCTTTCCTCCTTCACAGTGTGGTAGTTCCCGGTGCAGCCATCAAAGAACCTTCTTCCATGTTTGAAGCTGTCCCCAATGACTGGTTCACCACCAGAAAGAAACAAGTATTCATAGACACCGGCATCAAAATCATGTTTGTAGGTTCATCCATTTTAGCTCATCTTGTAGCTAATGGTTCCATGGAAGAAATGAGACAAGTGTTGGAATTCAGTGACCCAACATGGAAAGCCGTTGACTCGATTGACTCACAAGGTAACACGTTACTCCATTTAGCCATTTCACAAAGCAGACCAGACATAGTTCAATTACTCCTCGAATTCGAATCAAACATAGAAGCACAAAACAGTTCTGGTTCAACCCCTTTGGAAACAGCGTGTTCCTTAGGTGATGCCTTGATAACTGAGCTTCTATTAGCTCGTAAGGCCAACACCGAATCAGAATCATCCACGTGGCAACCGATTCACCTTGCAGCGAGAGAAGGACACGTGGAGACTCTGAGGTTATTGTTACTCAAAGGTGCGAAAATTGATTCTCTATCCAAAGATGGTAACACGGCGTTACATTTCGCCGTTGAGGAACGCAAGAAAGACTGCGTGAAACTCTTGTTAGCAAACGGTGCGAGAACGGACATTCGTAACGGAAAAGACGGCGACACCGTTTTACACGTGGCGGCCGTTAATGGCGACGAGAGCATGATCAAGCTGTTGTTACAAAAGGGTGCTAACAAGGATGTGAGAAATTTTCAGGGGAAGACAGCTTATGATGTTGCGGCGGAGAATGGACACGTGCGTGTGTTCGACGCGTTAAGGTTTGGGGACAGTTTGTGCGTGGCGGCGAGGAAAGGGGAGGTTAGGACAATTCAGAGGTTGTTGGAGTGTGGTGCGGTTATAAACGGGAGGGACCAAAACGGTTGGACGGCGTTACATAGGGCGTGTTTTAAGGGAAGGGTTGAAGTGGTTCGTGTTCTGTTGGAGAAAGGGGTTGAGGTGGATGTTAAGGATTGTGATGGGTACACGGCGTTGCACTGTGCGGTTGAGGCAGGGCATGGTGATGTGACCGAGGTGTTGGTGAAGAAAGGTGTTGATGTTGAGGCTAGAACTAATAAGGGTGTCACTGCTTTGCAGATAGCTGAGGCGTTGCATTATTTTGGGATCATGAGGATACTTCTTACTGGTGGGGCTGGTAGGGAGAATATGGGTCAAATGAATGAGTCAGAAGAACCTGTGGTGATTCCGTTAGTGGAAGGGATCAAAAGCAAGATGAAGATGAAGATGAAGAATGGCTTTGATCGTTCAATGGCTTTGCCTGTGGTCTAG 1581 0.4681 MDRLIRLDPSNIVPIRIEQGQKCHGQITLRNVMYTMPVAFRLQPLIKTRYTVKPHSGIISPLATLTIEIIYHLPQGSNLPHSFPHSDDSFLLHSVVVPGAAIKEPSSMFEAVPNDWFTTRKKQVFIDTGIKIMFVGSSILAHLVANGSMEEMRQVLEFSDPTWKAVDSIDSQGNTLLHLAISQSRPDIVQLLLEFESNIEAQNSSGSTPLETACSLGDALITELLLARKANTESESSTWQPIHLAAREGHVETLRLLLLKGAKIDSLSKDGNTALHFAVEERKKDCVKLLLANGARTDIRNGKDGDTVLHVAAVNGDESMIKLLLQKGANKDVRNFQGKTAYDVAAENGHVRVFDALRFGDSLCVAARKGEVRTIQRLLECGAVINGRDQNGWTALHRACFKGRVEVVRVLLEKGVEVDVKDCDGYTALHCAVEAGHGDVTEVLVKKGVDVEARTNKGVTALQIAEALHYFGIMRILLTGGAGRENMGQMNESEEPVVIPLVEGIKSKMKMKMKNGFDRSMALPVV* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02520 526 ProSiteProfiles Ankyrin repeat profile. 237 269 IPR002110 GO:0005515
Rops8g02520 526 ProSiteProfiles Ankyrin repeat profile. 391 423 IPR002110 GO:0005515
Rops8g02520 526 Gene3D - 134 302 IPR036770 -
Rops8g02520 526 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Rops8g02520 526 ProSiteProfiles Ankyrin repeat region circular profile. 304 335 - -
Rops8g02520 526 Gene3D Immunoglobulins 1 125 IPR013783 -
Rops8g02520 526 Pfam Ankyrin repeats (many copies) 166 213 IPR002110 GO:0005515
Rops8g02520 526 Pfam MSP (Major sperm protein) domain 5 110 IPR000535 -
Rops8g02520 526 ProSiteProfiles Ankyrin repeat profile. 424 456 IPR002110 GO:0005515
Rops8g02520 526 ProSiteProfiles Ankyrin repeat region circular profile. 172 203 - -
Rops8g02520 526 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Rops8g02520 526 PRINTS Ankyrin repeat signature 440 454 IPR002110 GO:0005515
Rops8g02520 526 PRINTS Ankyrin repeat signature 392 407 IPR002110 GO:0005515
Rops8g02520 526 Pfam Ankyrin repeats (3 copies) 345 422 IPR002110 GO:0005515
Rops8g02520 526 Pfam Ankyrin repeats (3 copies) 424 481 IPR002110 GO:0005515
Rops8g02520 526 Pfam Ankyrin repeats (3 copies) 243 335 IPR002110 GO:0005515
Rops8g02520 526 SUPERFAMILY Ankyrin repeat 166 488 IPR036770 -
Rops8g02520 526 Gene3D - 429 479 IPR036770 -
Rops8g02520 526 ProSiteProfiles Ankyrin repeat profile. 270 302 IPR002110 GO:0005515
Rops8g02520 526 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Rops8g02520 526 SMART ANK_2a 337 366 IPR002110 GO:0005515
Rops8g02520 526 SMART ANK_2a 205 234 IPR002110 GO:0005515
Rops8g02520 526 SMART ANK_2a 237 266 IPR002110 GO:0005515
Rops8g02520 526 SMART ANK_2a 172 201 IPR002110 GO:0005515
Rops8g02520 526 SMART ANK_2a 424 453 IPR002110 GO:0005515
Rops8g02520 526 SMART ANK_2a 304 333 IPR002110 GO:0005515
Rops8g02520 526 SMART ANK_2a 457 486 IPR002110 GO:0005515
Rops8g02520 526 SMART ANK_2a 270 299 IPR002110 GO:0005515
Rops8g02520 526 SMART ANK_2a 391 420 IPR002110 GO:0005515
Rops8g02520 526 ProSiteProfiles Ankyrin repeat region circular profile. 237 265 - -
Rops8g02520 526 ProSiteProfiles Ankyrin repeat region circular profile. 424 456 - -
Rops8g02520 526 ProSiteProfiles Ankyrin repeat profile. 304 336 IPR002110 GO:0005515
Rops8g02520 526 Gene3D - 361 428 IPR036770 -
Rops8g02520 526 ProSiteProfiles Ankyrin repeat region circular profile. 270 301 - -
Rops8g02520 526 SUPERFAMILY PapD-like 2 150 IPR008962 -
Rops8g02520 526 ProSiteProfiles Ankyrin repeat region circular profile. 391 422 - -
Rops8g02520 526 Gene3D - 303 360 IPR036770 -
Rops8g02520 526 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 142 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02520 Rops-Chr8 57723774 57725354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02520 362 466 Ion Channels AT4G32500 32.381 9.18e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02520 - - gmx:100782232 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02520 8 57723774 57725354 Rops5g01893 5 40078238 40079845 PCT