Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02501 ATGGAAATTCAATTCCAGCAACCAAACCTGCAGCATCAGAAAGCAGGCATTTCAGTCACCAAAGGAGGAAAATTCAAAGGGAGAAACAGAAACAGCAACACAAACAAATTTGTTGGGGTGAGACAAAGGCCTTCAGGAAGATGGGTAGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACAGCAGAGGAGGCAGCTAGAGCTTATGATGAAGCTGCATGCCTTCTTCGTGGATCCAACACTCGCACCAACTTCATCACTCATGTCTCCTTGGATTCCCCTCTTGCTTCTCGGATTCGAAATCTTCTTAACAACAGAAAAGGTATCAAAAAAAAGGAAGAAGTTGATGCATCTGCTACAACTGTCACAACTACTAGTAGTGCCACTAGCACTAGTAGTAATACAAGCAATAATGATAACAATGACCACACTCATTCTACTGAGACAACTCAAAACACACAGCTGTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAGGGAGGACTTTCAATCAGTTCCTCAATCCAACATTACATGGGACTTTGGACCTGTCTTTGATCGTTTTCCCATTGCTCAAATATTGGATATACCCAACAATACTGATGGCCTGACTTATACATCTGACTTAGAGCTTTCAGAATTTGAAAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGAGTGCATGAGTACATGGAAACTGTTCAGGATTCCAATGAAGCTCTGTGGGATCTTCCACCCTTGTGCTCAATGTTCTGTTAA 804 0.4104 MEIQFQQPNLQHQKAGISVTKGGKFKGRNRNSNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGIKKKEEVDASATTVTTTSSATSTSSNTSNNDNNDHTHSTETTQNTQLFDDAYKPDLSNCREDFQSVPQSNITWDFGPVFDRFPIAQILDIPNNTDGLTYTSDLELSEFERMKVERQISASLYAINGVHEYMETVQDSNEALWDLPPLCSMFC* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02501 267 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Rops8g02501 267 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Rops8g02501 267 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Rops8g02501 267 MobiDBLite consensus disorder prediction 120 162 - -
Rops8g02501 267 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Rops8g02501 267 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Rops8g02501 267 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Rops8g02501 267 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 233 - -
Rops8g02501 267 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Rops8g02501 267 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
Rops8g02501 267 MobiDBLite consensus disorder prediction 125 162 - -
Rops8g02501 267 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02501 Rops-Chr8 57427738 57428541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02501 33 267 AP2-EREBP Transcription Factor Family AT5G19790 45.041 2.16e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops8g02501 AP2 5.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02501 K09286 - gmx:100796898 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02501 8 57427738 57428541 Rops8g02501 8 57427738 57428541 ECH
Rops8g02501 8 57427738 57428541 Rops5g01937 5 40881404 40882479 PCT