Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02490 ATGCCAGAGTTGAGAAGTGGAGCTAGAAGGTCGAAGCGGCTTGGAGATCTTCAGCCTAGTCCACTACCTGTTGATCAAGGAGAGAATTGGGTACAGCCTGCTCCGAACAGAACTAGAAGGAGAGTTGGAGGTGGAAGAGGAAGAGGTGGTAATGCCACAGCTGTAGGCAAAGGGCCTTCACCAGCTGTACCCACAAGGCGAACTGCAGCTGGTAGAGGCCGCGGAGCGAGATTGATTGATCTGGATCCTGAACCTTGTGAGGTCCTTCCAGAACCTGTTGCTTTAGGGGCTCCAGAACCTATTTACAATCACGTAGAGGTAGTGGCCAATAATAATATTGTGATGGAGGGTGGAAGTGCAGATAAGGTGGCGGCAGGAGCTGAAGAAGAACCAAGCACAACTCCTGTCCCTGAGAGGGTTCAAGTTGGTAACTCTCCTGTATATAAGATAGAAAGGAAGTTGGGTAAGGGTGGTTTTGGCCAAGTTTATGTTGGCAGAAGGGTAAGTGGTGGCTCTGATCGAACAGGTCCAGATGCAATTGAGGTTGCACTTAAGTTTGAGCATAGAAACAGTAAAGGTTGCAATTATGGGCCTCCTTACGAGTGGCAAGTCTACAGTACTCTGAATGGTTGCTATGGCATTCCCTGGGTTCATTACAAGGGTCGTCAAGGAGATTTCTATATTTTGGTCATGGACATGCTTGGGCCGAGTCTTTGGGATGTGTGGAATTCTCTTGGCCAATCGATGTCGCCAAGTATGGTTGCTTGCATTGCAGTGGAGGCAATATCAATTCTTGAGAAGCTCCATTTGAAAGGGTTTGTTCATGGAGATGTAAAACCAGAAAACTTTTTGCTTGGTCAACCTGGATCAGCTGATGACAAGAAGTTATATCTTATTGATCTTGGTTTGGCTTCTAGGTGGAAGGATGCATCATCTGGTCAACATGTTGAATATGATCAGAGACCTGATATATTCAGGGGAACAATAAGGTATGCTAGTGTACACGCACATTTAGGCAGGACTGGAAGTCGAAGGGATGATCTTGAGTCACTGGCATACACATTAATATTTCTCATGAAAGGGAGATTACCATGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTCAGTAAGAAAAAAATGGCCACTTCTCCAGAGTTGATGTGCTGCTTTTGTCCTGCTCCATTTAAGCAGTTCCTAGAAGCTGTTACCAACATGAGATTTGATGAGGAGCCAAATTATTCCAAGCTTATATCACTTTTTGAAAGCTTGATTGAACCATGCACTCCATTGAGACCTATCAGAATTGATGGAGCTTTAAAGGTTGGTCAAAAGCGAGGAAGAATGCTTATAAATCTGGAAGAAGATGAGCAGCCTAAGAAGAAAGTGCGGTTGGGGAGTCCTGCTACTCAGTGGATATCAGTGTATAATGCACGCCGTCCCATGAAGCAGAGATATCACTATAATGTAGCAGACACAAGGCTCAGACAGCATGTAGACAAGGGTATTGAGGATGGGTTGTATATAAGCTGTGTGGCCTCTTCAGCAAATTTGTGGGCCCTAATCATGGATGCTGGAACAGGTTTTTCTTCCCAGGTTTATGAGTTATCACCAGCCTTCCTGCACAAGGATTGGATTATGGAGCAATGGGAGAAAAATTACTATATCAGTTCAATAGCTGGTGCAGTGAATGGGAGCTCCTTGGTTGTCATGTCCAAAGGAACTCCTTACACACAGCAGTCTTACAAAGTGAGCGAATCATTTCCTTTCAAATGGATAAACAAGAAGTGGAAAGAAGGTTTCCATGTTACCTCCATGACTACTGCTGGCAGTCGCTGGGGTGTTGTTATGTCCCGGAATGCTGGGTATTCTGATCAGGTTGTGGAGCTTGACTTTTTGTATCCAAGTGAAGGAATCCATCGACGATGGGAGAGTGGTTACCGGATTACTTCTATGGCTGCTACTAGTGATCAGGCAGCCTTCATACTAAGCATACCAAAACGCAAATTGCTTGATGAAACTCAAGAGACTCTGCGTACATCTGCTTTCCCCAGCACCCATGTAAAGGAAAAATGGTCCAAGAATCTCTATATTGCTTCAATATGTTATGGGCGAACTGTTTGCTAG 2130 0.4479 MPELRSGARRSKRLGDLQPSPLPVDQGENWVQPAPNRTRRRVGGGRGRGGNATAVGKGPSPAVPTRRTAAGRGRGARLIDLDPEPCEVLPEPVALGAPEPIYNHVEVVANNNIVMEGGSADKVAAGAEEEPSTTPVPERVQVGNSPVYKIERKLGKGGFGQVYVGRRVSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYSTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPSMVACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGSADDKKLYLIDLGLASRWKDASSGQHVEYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLMKGRLPWQGYQGDNKSFLVSKKKMATSPELMCCFCPAPFKQFLEAVTNMRFDEEPNYSKLISLFESLIEPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADTRLRQHVDKGIEDGLYISCVASSANLWALIMDAGTGFSSQVYELSPAFLHKDWIMEQWEKNYYISSIAGAVNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWESGYRITSMAATSDQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVC* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02490 709 CDD STKc_CK1 148 422 - -
Rops8g02490 709 ProSitePatterns Protein kinases ATP-binding region signature. 154 185 IPR017441 GO:0005524
Rops8g02490 709 SMART serkin_6 148 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02490 709 ProSiteProfiles Protein kinase domain profile. 148 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02490 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Rops8g02490 709 PANTHER CASEIN KINASE-RELATED 148 673 - -
Rops8g02490 709 SUPERFAMILY Protein kinase-like (PK-like) 148 436 IPR011009 -
Rops8g02490 709 Pfam Protein kinase domain 148 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02490 709 Gene3D Transferase(Phosphotransferase) domain 1 114 465 - -
Rops8g02490 709 FunFam Casein kinase 1-like protein 119 468 - -
Rops8g02490 709 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02490 Rops-Chr8 57222750 57229436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02490 125 308 EF-hand Containing Proteins AT5G66210 26.943 2.47e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Rops8g02490 Pkinase 8.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02490 - - gmx:100801967 1382.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02490 8 57222750 57229436 Rops8g02490 8 57222750 57229436 ECH