Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02485 ATGGCAATTGCACGCACTGGAGTCTACGTCGATGACTATTTGGAGTATGCCAGCACGTTGCCCGCTGAACTTCAGAGGCTTCTCAACACCGTTCGAGAACTCGATGAACGATCCCAATCTATGATAAACCAGACCAGGCAGCAGACAAAATACTGCATGGGGTTCTCATCACATGGCTCTAAGAAGGGTAATCATAGTTACAATAACAGTTACGTGAATGACGATGATGATGCTTCCATTGAGAAAATGAGAAAAGAAATTGAGGCATATCAGGATAGTGCATTGAGTCTATGTACCGAGAAGGTTTTGTTAGCACGGCAAGCATATGATCTGATAGATAGCCATATAAAACGACTTGATGAGGATTTAAACAACTTTGCCGAAGATTTAAAGCAAGAAGGGAAAATACCACCAGATGAACCAGCAATTCTTCCCCCATTGCCTATAGTCCCTAAAACTGAAAAGCGCAAGCCCATATATGGAACACCTCAATCAAAGAGACTTGATTACAGGGATAGAGACTGGGATCGGGAACGTGATAGGGACTTTGAGCTAATGCCTCCACCTGGAAGCCATAAGAAGGAGTATGCAACCCCTATGGATGTTGATCAACCCATTGATCCAAATGAACCTACATACTGTGTTTGTCATCAGGTATCCTTTGGAGATATGATTGCTTGTGATAATGAAAACTGCCAAGGAGGTGAATGGTTCCACTATTCATGTGTTGGCCTGACACAAGAGACAAGGTTCAAGGGAAAGTGGTATTGTCCGACTTGCAGATTACTACCACAATGTCAATGA 804 0.4303 MAIARTGVYVDDYLEYASTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCMGFSSHGSKKGNHSYNNSYVNDDDDASIEKMRKEIEAYQDSALSLCTEKVLLARQAYDLIDSHIKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPIVPKTEKRKPIYGTPQSKRLDYRDRDWDRERDRDFELMPPPGSHKKEYATPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTQETRFKGKWYCPTCRLLPQCQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02485 267 SMART ING_2 9 126 IPR024610 -
Rops8g02485 267 PANTHER INHIBITOR OF GROWTH PROTEIN 2 261 IPR028651 -
Rops8g02485 267 SMART PHD_3 213 261 IPR001965 -
Rops8g02485 267 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 126 IPR024610 -
Rops8g02485 267 SUPERFAMILY FYVE/PHD zinc finger 188 262 IPR011011 -
Rops8g02485 267 Coils Coil 24 44 - -
Rops8g02485 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 262 IPR013083 -
Rops8g02485 267 Gene3D - 5 124 - -
Rops8g02485 267 FunFam PHD finger protein ING 205 263 - -
Rops8g02485 267 ProSiteProfiles Zinc finger PHD-type profile. 211 263 IPR019787 -
Rops8g02485 267 CDD ING_plant 17 123 - -
Rops8g02485 267 CDD PHD_ING 213 260 - -
Rops8g02485 267 MobiDBLite consensus disorder prediction 133 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02485 Rops-Chr8 57129864 57134245 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops8g02485 ING 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02485 - - gmx:100787916 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02485 8 57129864 57134245 Rops8g02485 8 57129864 57134245 ECH