Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02481 ATGACAAGGAAGAAGGTGAAACTTGCATTTATCTCTGATGAATCTGCAAGGAAAACAACATTCAAGAAAAGGACGAAGGGTATCATAAAGAAGGTGAGCGAACTCTCCATTCTTTGTGGGATTCCGGTATGTGCTATAATTTCCAGTCCTTTTGATTCTCAGATAGAGGTCTGGCCAGATCCAAAGGGAGCCAAACAGGTGATTGAGAAGTATAAGAATTCATATGTGATAGACCAAAGCAAGAATGTGAACCAAGAAAGCTTCCTAAAGCAGAGGATTGCCAAAGCTCGGGACCAGCTAGCTAAGCTGCAACAGGAGAATTGTGAGAAGGAGCTGACCATGGATGTGTTCAAGTATATGCAAAACAAATCCCTACCAAAAGACTTGACCATTGAAAAGCTGAAAGATCTCAATAAGTTGATTGAGAAGAAAACGAAGGAGATTGAAATTAAGATAGCCGCACTTGGTTGA 471 0.4076 MTRKKVKLAFISDESARKTTFKKRTKGIIKKVSELSILCGIPVCAIISSPFDSQIEVWPDPKGAKQVIEKYKNSYVIDQSKNVNQESFLKQRIAKARDQLAKLQQENCEKELTMDVFKYMQNKSLPKDLTIEKLKDLNKLIEKKTKEIEIKIAALG* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02481 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops8g02481 156 Coils Coil 127 151 - -
Rops8g02481 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Rops8g02481 156 Coils Coil 86 106 - -
Rops8g02481 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Rops8g02481 156 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Rops8g02481 156 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops8g02481 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops8g02481 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops8g02481 156 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops8g02481 156 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Rops8g02481 156 PANTHER MADS BOX PROTEIN 3 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02481 Rops-Chr8 57109187 57109657 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02481 1 155 MADS-box Gene Family AT5G26630 44.231 4.25e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops8g02481 SRF-TF 1.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02481 - - gmx:100792290 199.904