Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02477 ATGACTAGGAAGGAGGTGAAACTTGCATTTATCTCTGATGAATCTGCAAGGAAAACAACATACAAGAAAAGGAAGAAGGGTATCATAAAGAAGGTGAATGAACTCTCCATTCTTTGTGGGATTCCGGTATGTGCTATAATTTCCAGTCCTTTTGATTCTCAGATAGAGGTCTGGCCAAATCTAGAGGGAGCCAAACAGGTGATTGAGAAGTATAAGAATTCATATGTGATAGACCAAAGTAAGAATGTGAACCAAGAAAGCTTCCTAAGGCAGAGGATTGCCAAAGCTCGGGACCAGCTAGCTAAGCTGCAACAAGAGAATTGCCAGAAGGAGCTGACCATGGATGCGTTCAAGTATATGCAAAGCAAATCCCTACCAAAAGACCTGACCATTGAAAAGCTGAAAGATCTCAACAAGTTGATTGAGAAGAAAACGAAAGAGATTGAAATAAAGATAACCGCACTTGGTTGA 471 0.4055 MTRKEVKLAFISDESARKTTYKKRKKGIIKKVNELSILCGIPVCAIISSPFDSQIEVWPNLEGAKQVIEKYKNSYVIDQSKNVNQESFLRQRIAKARDQLAKLQQENCQKELTMDAFKYMQSKSLPKDLTIEKLKDLNKLIEKKTKEIEIKITALG* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02477 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops8g02477 156 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops8g02477 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops8g02477 156 Coils Coil 127 151 - -
Rops8g02477 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops8g02477 156 Coils Coil 86 106 - -
Rops8g02477 156 Gene3D - 13 122 IPR036879 GO:0003677|GO:0046983
Rops8g02477 156 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Rops8g02477 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Rops8g02477 156 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Rops8g02477 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Rops8g02477 156 PANTHER MADS BOX PROTEIN 4 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02477 Rops-Chr8 57085727 57086197 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02477 1 155 MADS-box Gene Family AT5G26630 43.590 6.51e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops8g02477 SRF-TF 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02477 - - gmx:100792290 181.03