Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02472 ATGGATGTGTGCCACAATATATCAGTTTCCGGTGAGTGCAAGCAAGAGCAGGTCCTTGCCCCTTCTTGCTCCAAGCTCTCTACCTTCTCAAGCAGCCTTGATGACCTGTTATCTGCTCAGAACATGGAAGTGGACGTTGGCATGGAATGGTTGTCAGTTTTTGTTGAAGACTGCTTTTCCAGCCCTCCAAGTTGTGTCTTGGTACCAGCTGGTGTTCAAACTTCAAGCACAAGCTCCAAACCTTCAAGCACACTGCAAAGACCAAGGCAAAATGAGTCTCCTTTGCAAAATTTTGCAGTACCAGGGAAGGCCAGGAGCAAAAGGAAAAGACTTTCAGCTCCTAGAACCAAAGACCCTTTAAGCATCTGGTCACACCATTTAAATCCACAAAATGAAGCCTTGAGTTCTGACCCTCCCCTCCTTAAACAGGCTTATTGGTTGGCTGATAGTGAACTCATTGTACCTAAACAGAAGGATGAGCAAGAGTTAACCAAAGATGGAGAAGTGCTGGAAAAGGAGATTATGAGCAAGGAAAGCTTTGGGGACTCTGAGCCTGAGGTTAGCAATGGTCAACATCCAATGCCAAGGAGGTGCACCCATTGTCTGGCTCAGAGGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTGCTACCAGAGTATAGGCCAGCCAAGAGTCCAACTTTTGTAAGCTATTTGCACTCCAATTCTCACAAGAAAGTCATGGAGATGAGGATGGCTGTTCCATCTTCCATTCCTAGTGAGCAATAA 816 0.4669 MDVCHNISVSGECKQEQVLAPSCSKLSTFSSSLDDLLSAQNMEVDVGMEWLSVFVEDCFSSPPSCVLVPAGVQTSSTSSKPSSTLQRPRQNESPLQNFAVPGKARSKRKRLSAPRTKDPLSIWSHHLNPQNEALSSDPPLLKQAYWLADSELIVPKQKDEQELTKDGEVLEKEIMSKESFGDSEPEVSNGQHPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVPSSIPSEQ* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02472 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 256 - -
Rops8g02472 271 PANTHER GATA TRANSCRIPTION FACTOR 15 264 - -
Rops8g02472 271 MobiDBLite consensus disorder prediction 71 97 - -
Rops8g02472 271 ProSitePatterns GATA-type zinc finger domain. 198 223 IPR000679 GO:0006355|GO:0043565
Rops8g02472 271 MobiDBLite consensus disorder prediction 71 123 - -
Rops8g02472 271 Pfam GATA zinc finger 198 232 IPR000679 GO:0006355|GO:0043565
Rops8g02472 271 ProSiteProfiles GATA-type zinc finger domain profile. 192 228 IPR000679 GO:0006355|GO:0043565
Rops8g02472 271 CDD ZnF_GATA 197 244 IPR000679 GO:0006355|GO:0043565
Rops8g02472 271 Gene3D - 188 259 IPR013088 GO:0006355|GO:0008270
Rops8g02472 271 FunFam GATA transcription factor 188 269 - -
Rops8g02472 271 SMART GATA_3 192 246 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02472 Rops-Chr8 57023661 57025230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02472 48 260 C2C2-Gata Transcription Factor Family AT4G32890 41.818 3.26e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops8g02472 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02472 - - gmx:100786479 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02472 8 57023661 57025230 Rops8g02472 8 57023661 57025230 ECH
Rops8g02472 8 57023661 57025230 Rops5g01970 5 41616719 41619460 PCT