Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02466 ATGGAAGAACCTGTTGTGGTGAATAAAGGTGAAGAGCCTCTGGATTTGCCTCCAGGTTTCAGGTTCCATCCCACAGATGAGGAGATAATTGTTCATTATCTCACTGAGAAGGTGAAGAATAGCAGTTTCAGTGCAACTGCTGTTGGAGAAGCTGATTTGAACAAGTGTGAACCTTGGGATTTACCTAAGAAAGCCAAGATGGGTGAGAAAGAGTGGTACTTCTTCTGTCAAAAAGATAGGAAGTATCCAACTGGTACGAGAACAAATAGAGCTACAGAATCTGGGTACTGGAAGGCCACAGGAAAAGATAAGGAAATTTACAAAGGAAAAGGCAACCTTGTTGGGATGAAGAAGACCCTTGTGTTCTACAGAGGGAGAGCTCCAAAAGGAGATAAAACCAATTGGGTCATGCATGAATTCAGATTGGAAGGCAAATTTGCAACTTACAACCTCCCAAAAGCAGCAAAGGATGAATGGGTTGTCTCCAGGGTTTTTCACAAGAACACAGATGTTAAAAAGACCTCAATTCCTGACCTTTTGAGGATGAACTCTATTGGGGATGATTTGCTTGATTATTCTTCACTTCCACCTCTCATGGATCCTTCTTATGGCAACACCAACAAACCAGGCTTTAGTGACGATGATTTCAAGGGAACCAACCCTTTTTCATCAAATAAATCATCATCGGACGGCTATTATCTTCCCAGCTTTTCAATCAACAATCACCACCACCAGCTTTTGATCAAACCAGAAGACCATAGAGCCTATGAGATTCCCACCATTAACTACACTTCTTCCAACCAAGCCAATCTCGGCAACCAGATGGGAAACACACTCTCACAGCCTCAGCCTCAAATTCGAATCCAAAATCAAAGCTCCCCCTTTCTGAAGAACTCATTCTCTGACTACTATATGCACCAAAACAGGATGAAAAGTTCCATGCCAAGTGTTGCAGGTTCAGGTTTTGGGACCAGTAACCATGATCAAGCTATTCTAAAAGCATTTGCAGTCAATAATGATTACATTTCCGGGTTGGACAAACAGTGCAAGATGGAACAATTCTCTTCTAACCATTCACAAGACACTGGCCTTAGCAATGACACATCCTCAGTGGTTTCAAAGCAAGACATGGGAAGAAATAGGGCATTGTATGAAGATCTTGAGGGTCCATCATCATCAGTTGCACCTCTCTCAGATTTGGATTGTTTGTGGGACTACTGA 1221 0.4234 MEEPVVVNKGEEPLDLPPGFRFHPTDEEIIVHYLTEKVKNSSFSATAVGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGTRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGDKTNWVMHEFRLEGKFATYNLPKAAKDEWVVSRVFHKNTDVKKTSIPDLLRMNSIGDDLLDYSSLPPLMDPSYGNTNKPGFSDDDFKGTNPFSSNKSSSDGYYLPSFSINNHHHQLLIKPEDHRAYEIPTINYTSSNQANLGNQMGNTLSQPQPQIRIQNQSSPFLKNSFSDYYMHQNRMKSSMPSVAGSGFGTSNHDQAILKAFAVNNDYISGLDKQCKMEQFSSNHSQDTGLSNDTSSVVSKQDMGRNRALYEDLEGPSSSVAPLSDLDCLWDY* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02466 406 FunFam NAC domain-containing protein 100-like 25 171 - -
Rops8g02466 406 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 290 - -
Rops8g02466 406 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Rops8g02466 406 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Rops8g02466 406 MobiDBLite consensus disorder prediction 354 373 - -
Rops8g02466 406 MobiDBLite consensus disorder prediction 203 222 - -
Rops8g02466 406 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Rops8g02466 406 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02466 Rops-Chr8 56901651 56903779 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02466 1 228 NAC Transcription Factor Family AT5G18270 71.008 2.42e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops8g02466 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02466 - - aprc:113861501 668.307