Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02463 ATGGGAACCCCAGAATCCAACTTGCCACCTGGTTTTAGGTTCCACCCAACTGATGAGGAGCTCATTCTTCATTATCTCAGGAAGAGGGTGGCCTCCATACCCTTGCCAGTTTCCATCGTTGCTGAGGTTGATATCTACAAGTTAGATCCATGGGAATTACCAGCTAAGGCTTCCTTTGGGGAGAAAGAATGGTATTTTTTCAGTCCTAGAGACCGCAAGTACCCAAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCTACTGGCACTGATAAGACCATAGTAGCATCATTGCCAAGAGGAGGAGCCCAAGAGAACATTGGTGTGAAGAAGGCTCTTGTATTCTACAAAGGAAGACCCCCAAAGGGTATCAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACAACAACAAACCCATTAAGCTTAAAGACTCTTCCATGAGGTTGGACGATTGGGTACTGTGCCGGATTTACAAGAAGTCCAAATATACTCTATCTTCAACAGAGGCATCAACAGAGGTAGGTGAGGTGGATCAAACAGAAGAGCAACTATTCAAAGATACCCTTTTCCCAATCTCAAAAAGTTCAACCCCTTCTCCTACTCAGAACACACTGATATCTCAGAAATCTGTATCCTTCTCCAACTTGTTGGATGCCATGGACTACTCCATGCTGAGCAACTTCTTATCTGAGAACCATTCCAACCCAACAGGGATTGGATCAAGTGCAGGCTTCAACAGTGGGAGTTTGGGTCAGCAATCCTCCCAAATCAACACCAGCAATAGTTACATGTTTCAGAAGAATCCTCAATTGAACCCTTCAGTCCTAAACATGGAAAGCATCAAGCCAAAGCGCCAGCTTTCAAACATTGATGAGGACACGTTGCACCCTTCAAAGAAATACCTGAGTTCCTTTTGCAACTTCTCTAATATCAATGCCCAATACGAGAACCCACAATGGAACTACCTCATGAAACAGTCTTTGATGAATCAGCAGTTACTTCTGGGACCTCATCTTCAATTTCAAGGATAA 1050 0.4438 MGTPESNLPPGFRFHPTDEELILHYLRKRVASIPLPVSIVAEVDIYKLDPWELPAKASFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVASLPRGGAQENIGVKKALVFYKGRPPKGIKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKYTLSSTEASTEVGEVDQTEEQLFKDTLFPISKSSTPSPTQNTLISQKSVSFSNLLDAMDYSMLSNFLSENHSNPTGIGSSAGFNSGSLGQQSSQINTSNSYMFQKNPQLNPSVLNMESIKPKRQLSNIDEDTLHPSKKYLSSFCNFSNINAQYENPQWNYLMKQSLMNQQLLLGPHLQFQG* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02463 349 Pfam No apical meristem (NAM) protein 9 139 IPR003441 GO:0003677|GO:0006355
Rops8g02463 349 SUPERFAMILY NAC domain 4 166 IPR036093 GO:0003677|GO:0006355
Rops8g02463 349 ProSiteProfiles NAC domain profile. 8 166 IPR003441 GO:0003677|GO:0006355
Rops8g02463 349 FunFam NAC transcription factor 56 17 171 - -
Rops8g02463 349 Gene3D NAC domain 17 170 IPR036093 GO:0003677|GO:0006355
Rops8g02463 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02463 Rops-Chr8 56845103 56846944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02463 4 349 NAC Transcription Factor Family AT3G04070 52.809 5.57e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops8g02463 NAM 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02463 - - vun:114194335 597.045