Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02453 ATGGTTGGTGCTATAAAAGCAGCAATTGGAGATGCAGTGTTAACTTTCATGTGGGTGTTCTGTTCTTCCACTCTAGGAATAGCTTCTCGTACAATAACCAATGCCCTTGATCTTCAAAACCTCTCTTACAATGGCTTCCCTTACCCTTCTTTCCTTATAACCACTACCCTCGTTTTCCTCCTTGTCTTCAGCTTCACCTTCATTGGTAATGCCTTGGGTGGTGCCAGTTTCAACCCCACTGCCACTGCTGCATTCCATGCCGTTGGTCTTGGTTCAGACACACTCTTCTCAATGGCTCTTCGTTTCCCAGCACAGGCGCTTGGTGCTGCGGGGGGTGCAATGGCAATTACAGAGGGACCTAGAAGTAATTTAATGAAGATTTGGTTGCTGGCCATGTCAACCGTCACTATGGTCATGGTTGGATCTACTTACACTGGGCCAGCCATGAACCCTGCCAATGCCTTTGGTTGGGCATACTTAAACAACAAGCATAACACATGGGACCAATTCTATGTATACTGGATTTGCCCCTTCACTGGAGCAATATTGGCTGCTTGGCTATTCCGTGCTATCTTCCCCCCACCACCAGAAGTAAAACAGAAGAAGGCATAG 612 0.4722 MVGAIKAAIGDAVLTFMWVFCSSTLGIASRTITNALDLQNLSYNGFPYPSFLITTTLVFLLVFSFTFIGNALGGASFNPTATAAFHAVGLGSDTLFSMALRFPAQALGAAGGAMAITEGPRSNLMKIWLLAMSTVTMVMVGSTYTGPAMNPANAFGWAYLNNKHNTWDQFYVYWICPFTGAILAAWLFRAIFPPPPEVKQKKA* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02453 203 Gene3D Glycerol uptake facilitator protein. 113 202 IPR023271 -
Rops8g02453 203 PRINTS Major intrinsic protein family signature 171 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g02453 203 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g02453 203 PRINTS Major intrinsic protein family signature 131 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g02453 203 Pfam Major intrinsic protein 131 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g02453 203 SUPERFAMILY Aquaporin-like 4 197 IPR023271 -
Rops8g02453 203 PANTHER AQUAPORIN SIP1-1 3 118 IPR044222 GO:0015250
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02453 Rops-Chr8 56561528 56567208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02453 4 203 Major Intrinsic Protein MIP AT5G18290 43.496 1.54e-59 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02453 K09875 - gmx:102669186 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02453 8 56561528 56567208 Rops8g02453 8 56561528 56567208 ECH