Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02448 ATGTTTTATGGGGATAGAAGGACCAGGGATGTTGAGGAACTGAAGAATTATGATCTGGTGTTGACAACTTACTCTACTTTTGCCAAGGAATTTGATGGGCCAGGCACTGAGGTGAGGAAATTCGAATGGCGGAGAATCATATTGGATGAAGCGCATATGATCAAGAGCTTATATGCTGCACAAAGTCTAGCAGTAACCGCAGTTAAGGCTAAGAGGAGGTGGGCTGTTACAGGGACACCCTATCAAAACGGGTCCTGTGATTTGTTATATCTTATGGCATTTTTGCACTTTGAACCCTTTTCAATATGGAGCTATTGGCAAAGCTTGGTTCAACGTCCTCTTTGTCTTAACAACGAGAGTGGCCTTATGCGCTTGAAGGTATAA 384 0.4323 MFYGDRRTRDVEELKNYDLVLTTYSTFAKEFDGPGTEVRKFEWRRIILDEAHMIKSLYAAQSLAVTAVKAKRRWAVTGTPYQNGSCDLLYLMAFLHFEPFSIWSYWQSLVQRPLCLNNESGLMRLKV* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02448 127 Gene3D - 1 127 IPR038718 -
Rops8g02448 127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 117 IPR027417 -
Rops8g02448 127 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 98 IPR014001 -
Rops8g02448 127 Pfam SNF2-related domain 9 124 IPR000330 GO:0005524|GO:0140658
Rops8g02448 127 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 2 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02448 Rops-Chr8 56375648 56376031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02448 1 127 RAD5 or RAD16-like Gene Family AT5G05130 62.992 3.31e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops8g02448 SNF2_N 6.9e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02448 K15711 - rvl:131322224 166.777