Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02429 ATGAGTTTTCAAGATATCCAAGGTGGGGCCACCTCTTCCGCTCGTCGGAACCAGTCGCCGTCGCAGGCCGTCGCTGCCGGAATTTTCCAGATCAACACTGCCGTCGCTACTTTCCGACGACTCGTTGATGCCGTTGGAACCGTTAAAGACACTCCAGAGCACCGTCAGAAACTGCACAACACGAGGCAGAGGATATTGCAACTGGTGAAGGATACTTCTGCTAAGCTCAAGACCTTGACTGAATCTGATCGTGATGCTAATACCAATGCTAGTAAGAAAATTGAAGATGCTAAGCTGGCAAGAGATTTCCAAACCACATTGCAAGAATTCCAGAAAGTACAGCAGCTTGCTTCTGAGCGCGAATCAACTTACACTCCTGCTACCCCCTCTACTTCTTTACCAATAAGCTCTGGCTCAGGTGAAGAATCGGTTGAGAGCCAACCTTTTATCAGAGAGCAGAAGAGGCAAGAGATACTTCTATTGGATAATGAAATTTCCTTCAATGAGGCCATGATTGATGAAAGAGAACAGGGTATTAGAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTCAAGGACCTTGCTGTTCTGGTTCATGATCAGGGTGTTGTTATTGATGATATTCAATCAAATGTTGATTCTTCTGCTGGTGCAACAACCCAAGGTAGGGTCCAGCTAGCCAAAGCTTCCAAAAGTGTGAAATCCAGAACTTCATGGTGTTGGTGGGTGCTTGTAATTGTTGTGGCTGTGCTCGTCATCTTACTTCTCGTACTCATTATTTAG 789 0.4525 MSFQDIQGGATSSARRNQSPSQAVAAGIFQINTAVATFRRLVDAVGTVKDTPEHRQKLHNTRQRILQLVKDTSAKLKTLTESDRDANTNASKKIEDAKLARDFQTTLQEFQKVQQLASERESTYTPATPSTSLPISSGSGEESVESQPFIREQKRQEILLLDNEISFNEAMIDEREQGIREVEEQIGQANEIFKDLAVLVHDQGVVIDDIQSNVDSSAGATTQGRVQLAKASKSVKSRTSWCWWVLVIVVAVLVILLLVLII* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02429 262 Pfam SNARE domain 206 257 IPR000727 -
Rops8g02429 262 Gene3D - 163 262 - -
Rops8g02429 262 SUPERFAMILY t-snare proteins 19 224 IPR010989 GO:0016020|GO:0016192
Rops8g02429 262 PANTHER SYNTAXIN 19 250 IPR045242 -
Rops8g02429 262 CDD SNARE_Qa 172 230 - -
Rops8g02429 262 SMART SynN_4 9 122 IPR006011 GO:0016020
Rops8g02429 262 MobiDBLite consensus disorder prediction 117 148 - -
Rops8g02429 262 FunFam Syntaxin-22 like 162 262 - -
Rops8g02429 262 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 169 231 IPR000727 -
Rops8g02429 262 FunFam Syntaxin-22 like 14 128 - -
Rops8g02429 262 SMART tSNARE_6 164 231 IPR000727 -
Rops8g02429 262 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Rops8g02429 262 MobiDBLite consensus disorder prediction 117 146 - -
Rops8g02429 262 Gene3D - 8 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02429 Rops-Chr8 56049155 56052005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02429 1 248 SNARE and Associated Proteins AT5G46860 59.055 2.72e-101 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02429 - - gmx:100787141 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02429 8 56049155 56052005 Rops8g02429 8 56049155 56052005 ECH