Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02426 ATGAACCGTTATACGAAGGGCAAAAAGAAGCAAACGGCAGCAGCAACAACAAGCGAAGCGACGACACAAGAGAATCCAACGGCATGGGGAGGGAGGTACCTCGGTGTTCGGAGGAGGCCATGGGGGAGGTACGCGGCGGAGATTCGAGACCCTTCCACCAAAGAGAGACACTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCTTTAGCATACGACAGAGCCGCACGCTCCATGCGTGGGTCACGTGCTCGCACCAACTTCGTCTACGCGGACACGCCTCCCGGTTCCTCCGTCACCACCATCATCTCCCCGGACCACCACCTCTTTCAACCCGACCCGATTATTCCATCCCTCGACCCGGTTTCTCTCTTGACAGAAATGCCACCCGCTTTTTACGCTTACGGTTACAACGATAACAAAAATCCTATAACCGCTCCAACCCAGGAGGGCCCACAACAACTGTTTTTCGAGGATAGTAATAGCACCGTTGAGCTTCCACCGTTGCCACCTGATATCACTAGCTCCGTAGGTTATGACCTGGACCAGGATCATGGTTTTTTGGCTACAAATAATAATGATAATGATAATGATAATAACGGATATTATTATTGGGAGCAGAATATGGGGGATTATTACTTGAATAGTCCAATGTTCAGCACAATGCCAACAGTGTCAGAGAATGTGACAGGTCCTGAAGGTTTTGATTTCGGGAATTCCTCCTTTTTCTTCTGA 735 0.5061 MNRYTKGKKKQTAAATTSEATTQENPTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYADTPPGSSVTTIISPDHHLFQPDPIIPSLDPVSLLTEMPPAFYAYGYNDNKNPITAPTQEGPQQLFFEDSNSTVELPPLPPDITSSVGYDLDQDHGFLATNNNDNDNDNNGYYYWEQNMGDYYLNSPMFSTMPTVSENVTGPEGFDFGNSSFFF* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02426 244 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Rops8g02426 244 MobiDBLite consensus disorder prediction 1 31 - -
Rops8g02426 244 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Rops8g02426 244 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 138 - -
Rops8g02426 244 FunFam Ethylene-responsive transcription factor 2 32 90 - -
Rops8g02426 244 MobiDBLite consensus disorder prediction 7 28 - -
Rops8g02426 244 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Rops8g02426 244 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Rops8g02426 244 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Rops8g02426 244 CDD AP2 32 88 IPR001471 GO:0003700|GO:0006355
Rops8g02426 244 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Rops8g02426 244 Pfam AP2 domain 33 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02426 Rops-Chr8 55985342 55986076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02426 16 237 AP2-EREBP Transcription Factor Family AT5G13910 43.933 2.04e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g02426 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02426 K09286 - gmx:100792421 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02426 8 55985342 55986076 Rops8g02426 8 55985342 55986076 ECH
Rops8g02426 8 55985342 55986076 Rops11g03274 11 62512230 62515585 PCT