Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02424 ATGGCCAGAAAACCCAATATATATAACCATTTCAAGCTAAATCTCAATCTATTCTCTCTCTCCCGCCGCCAAGCCACTGGGTGTGTTGGTTATCTAATCTCTGCTACTCTAGTTCTAGGGTTTTTGTGTGGTTTTTTGGCTGCTCCAGTATCTTCTGCCAACATGGTTCTTCAGAATGATATCGATTTGCTAAATCCCCCAGCTGAGCTTGAGAAGAGAAAGCACAAACTCAAGCGTCTTGTTCAGTCTCCGAACTCTTTCTTCATGGATGTTAAGTGCCAGGGTTGCTTCAACATAACCACTGTCTTTAGCCACTCTCAGACTGTTGTGGTATGCGGCAACTGTCAGACAGTCTTGTGCCAGCCAACAGGCGGGCGGGCAAGGTTGACCGAGGGATGCTCCTTTAGGAAGAAGGGAGACTGA 423 0.4681 MARKPNIYNHFKLNLNLFSLSRRQATGCVGYLISATLVLGFLCGFLAAPVSSANMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02424 140 PANTHER 40S RIBOSOMAL PROTEIN S27 46 140 IPR000592 GO:0003735|GO:0005840|GO:0006412
Rops8g02424 140 SUPERFAMILY Zn-binding ribosomal proteins 84 138 IPR011332 GO:0006412
Rops8g02424 140 Hamap 30S ribosomal protein S27e [rps27e]. 78 138 IPR000592 GO:0003735|GO:0005840|GO:0006412
Rops8g02424 140 Pfam Ribosomal protein S27 84 138 IPR000592 GO:0003735|GO:0005840|GO:0006412
Rops8g02424 140 FunFam 40S ribosomal protein S27 55 140 - -
Rops8g02424 140 ProSitePatterns Ribosomal protein S27e signature. 92 124 IPR000592 GO:0003735|GO:0005840|GO:0006412
Rops8g02424 140 Gene3D - 59 139 IPR023407 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02424 Rops-Chr8 55927463 55929474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02424 55 140 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 95.349 1.57e-59 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02424 K02978 - minc:123230388 183.726