Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02408 ATGTCAAGTACTCTTGCAGCATTATTAGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATTGCTATAATACTTCTATGGTTTTGTCTTTCTCGCCAGAGGAGTGTTTCTAGGACTTCAGAGACAGGGTCCTCTGATCCTTCCCAAGTGGGAAGACATGGTGCAATTGAGTTGTCATTACGAGATACTAGGCGTTTTGAGATGGAAGAACTTTCACAGGCAACAACAAATTTCAGTGACAAAAATTTGATTGGAGAAGGGAAATTTGGAGAGGTTTACAAGGGTTTACTTCAAGATGGGATGCTTGTAGCCATCAAAAAGCGCCGTGGACTCCCTAGTCAGGAATTTGTTGAGGAGGTACGGTATCTCTCATCTATCCACCATCGGAATCTTGTGACTCTTTTAGGCTACTGCCAGGAAAACAATCTACAGTTTCTTATATATGAATATGTGCCTAATGGAAGCGTCTCCAGTCACTTGTATGGCGCTGGTCAACAATCGCGAGAGAAGCTAGAATTCAAGCATAGACTTCCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCACTCCTTGAGTCCCCGTTTGTTGCATAAGGATTTCAAAACAGCTAATGTTCTTGTGGATGAAAACTTCATTGCTAAGGTCGCAGATGCAGGGCTTCGTAATTTTTTGGGGAGAGTTGACATTGCAGGCTCTTCTTCTCAAGTGGCAGCAGATGAGATATTCCTTGCACCTGAGGTGAGAGAGTTCAGACGATTTTCTGAAAAGAGTGATGTATACAGCTTTGGAGTATTTTTGCTGGAATTGTTGAGTGGGAAGGAAGCAATAGAATCACCCTTTCCGGACTCTAATCAAAATCTGGTTGAATGGGTGCTAAGTAATCAAGACCGTGGCCTTATGTCTAATATCATTGACCGGAGATTGGAGAGTAGTTTTACAGCTCAAGGCATGGAAGATTACATCATGTTGATAATTAGATGTTTAGATCCTTCAAGTGAGAGAAGACCTGCCATGAGCTATGTGGAAATGGAACTTGATCGGATCCTAGAGAGAGAAATGAACTTGACAACAATCATGGGTGAAGGGACCCCAACTGTGACTCTTGGAATGGATACCAGAGAATAG 1131 0.4315 MSSTLAALLGGAAGAVALVGIAIILLWFCLSRQRSVSRTSETGSSDPSQVGRHGAIELSLRDTRRFEMEELSQATTNFSDKNLIGEGKFGEVYKGLLQDGMLVAIKKRRGLPSQEFVEEVRYLSSIHHRNLVTLLGYCQENNLQFLIYEYVPNGSVSSHLYGAGQQSREKLEFKHRLPIAQGAAKGLAHLHSLSPRLLHKDFKTANVLVDENFIAKVADAGLRNFLGRVDIAGSSSQVAADEIFLAPEVREFRRFSEKSDVYSFGVFLLELLSGKEAIESPFPDSNQNLVEWVLSNQDRGLMSNIIDRRLESSFTAQGMEDYIMLIIRCLDPSSERRPAMSYVEMELDRILEREMNLTTIMGEGTPTVTLGMDTRE* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02408 376 Gene3D Transferase(Phosphotransferase) domain 1 151 363 - -
Rops8g02408 376 SUPERFAMILY Protein kinase-like (PK-like) 63 345 IPR011009 -
Rops8g02408 376 Gene3D Phosphorylase Kinase; domain 1 42 150 - -
Rops8g02408 376 FunFam Protein kinase superfamily protein 151 364 - -
Rops8g02408 376 FunFam Protein kinase superfamily protein 43 150 - -
Rops8g02408 376 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 14 355 IPR047117 -
Rops8g02408 376 ProSiteProfiles Protein kinase domain profile. 78 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02408 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Rops8g02408 376 Pfam Protein tyrosine and serine/threonine kinase 82 346 IPR001245 GO:0004672|GO:0006468
Rops8g02408 376 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02408 Rops-Chr8 55670163 55674677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02408 5 368 Receptor kinase-like Gene Family AT3G46290 36.573 6.45e-64 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Rops8g02408 PK_Tyr_Ser-Thr 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02408 - - gmx:100305436 660.218