Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02396 ATGCAGGACCCATCCCAGCAGCCTTTACATTTGCCAGATCAATTCAAAGGCAATAATAATGCAAGAAAAAGACATTATAGAGGAGTTAGGCAGAGACCATGGGGCAAATGGGCAGCCGAAATCCGTGACCCTAAAAAGGCGGCTAGAGTGTGGCTTGGCACCTTTGACACGGCTGAGGCTGCAGCTGCTGCTTATGATGCTGCTGCTTTGAAATTCAAAGGAACCAAAGCCAAACTCAATTTCCCAGAACGCATTAACTTTGCGGCTTCCTCAACCTACAACAACACTTCACTTCATAACCAAGCTTCTTCTGCACCAACACCAACACTTGAGGCTTCTCCACCACCATCATCAGTGTATCAACCTCTTCTTCCACCTCCTCCTTTATCATCATCACAAGGAGAAGGGTTTGGATTCCCAAACCTAATGGAGTATGCACAGCTTCTTTGGAGTAGGGATGATGATGATCTACAACGTGCTGCTTTGGATCTTCATCATCATCATCGTCGTCGTCGTCCCAATGATCCCTTTCTTTATTGTGATTCAAGTTCATCAATGCCAACGTCAAGTTCTATGAATCAACAACAGGTTGGAGATGATAACCCGACTGCTCCAAAGGAAGATTATGGTTCTGGTGGTTCTTGTTTTTTCAAAGAGAGTAATTGA 666 0.4474 MQDPSQQPLHLPDQFKGNNNARKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGTKAKLNFPERINFAASSTYNNTSLHNQASSAPTPTLEASPPPSSVYQPLLPPPPLSSSQGEGFGFPNLMEYAQLLWSRDDDDLQRAALDLHHHHRRRRPNDPFLYCDSSSSMPTSSSMNQQQVGDDNPTAPKEDYGSGGSCFFKESN* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02396 221 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Rops8g02396 221 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Rops8g02396 221 CDD AP2 25 83 IPR001471 GO:0003700|GO:0006355
Rops8g02396 221 MobiDBLite consensus disorder prediction 1 29 - -
Rops8g02396 221 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Rops8g02396 221 MobiDBLite consensus disorder prediction 109 129 - -
Rops8g02396 221 MobiDBLite consensus disorder prediction 98 136 - -
Rops8g02396 221 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Rops8g02396 221 MobiDBLite consensus disorder prediction 171 221 - -
Rops8g02396 221 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Rops8g02396 221 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700|GO:0006355
Rops8g02396 221 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Rops8g02396 221 PANTHER DNA-BINDING DOMAIN 18 170 IPR044808 GO:0003700|GO:0009873
Rops8g02396 221 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Rops8g02396 221 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02396 Rops-Chr8 55482894 55484616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02396 2 93 AP2-EREBP Transcription Factor Family AT5G61890 71.277 3.75e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g02396 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02396 - - lja:Lj1g3v3904450.1 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02396 8 55482894 55484616 Rops10g00872 10 19733177 19734594 ECH
Rops8g02396 8 55482894 55484616 Rops8g02396 8 55482894 55484616 ECH
Rops2g00674 2 9588312 9591923 Rops8g02396 8 55482894 55484616 ECH
Rops10g00872 10 19733177 19734594 Rops8g02396 8 55482894 55484616 ECH
Rops8g02396 8 55482894 55484616 Rops5g01112 5 22858528 22860838 PCT
Rops5g02062 5 44173887 44175694 Rops8g02396 8 55482894 55484616 PCT