Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02393 ATGGTTTCTACTCGGGCGGAGAAGAGCTCTGAATGCAAAATCGCCGTGAAGCATGGCGGAAAAGGAGCCAAGCGTAGAGAGAACTCGAGAGAATCCAAGGAATCGCCAATGCAGCAGCGGAGAATAAGTGCTCGAATCCAAGCGCAGCAAAGAGCGGCTGAGGAGCTTGAGGTTCGTCGGAAAACGGTGGTCCTAGAAGACGATGAAAAGAAATGCGACGAGGTGACGGTGGTGCCGGCGAAGGTGAACAAGCGATGTAGAATGAGTAACGGTGAAGAGAGTGTGGGAAATGGAGAGGTTGTTTCGGAGCAACCAAAGAGGATGAAGAAGAAGCCGGTATCGAGTGCGAAACGTGAGGTGAACCACGAGGTAAAGGTGGATTCCAAAAATGTGAAACAAGAGGTGAAGCGTAAGGTTCAGGATGCCAAAAGAACGGCGGATTCTGAAAATGCGAATGGTGAGGTGAGGTGCGAGGTTGAGGATGGAAAAAGAACAGTGGATTTGGAGAATGGAGTTGGGGTATTGGCTGATAAGAGCTCTTCCGTGAAGGTGAAGGAGACAATCAGGTTGTTTAATAAGCACTATCTTCATTTTGTTCAGGCGGAGGAAAAGAGGTGCGGGAAAGTGGAAGCTGACCGGAAAGCTGCAAAGAAAGGGTCAAAATCAAAGAAAGGTGCTCCACCTGAAGATTCAAAGACCACAGCTAAACGACCTGATCTGAAGGCCATATCCAAGATGATGGAAAATAATGAGATACTGTACCCTGAGAAGAAAGTTGGCAACATTCCGGGTATTGAGGTTGGACATCAATTCTATTCTCGTGCTGAAATGGTTGCAGTTGGTTTTCATAGCCACTGGTTAAATGGCATTGATTATATGGGCCTATCCTATACCAAACTGTACAGCAGCTATACATTCCCTGTTGCTGTGGCCATTGTTTTGTCGGGCATGTATGAAGATGATCTGGATAATGCAGAGGATGTTGTATACACTGGTCAAGGTGGGCATAATCTGACTGGTGATAAACGTCAAATCCGTGATCAAAAATTAGAGCGTGGTAATCTGGCACTCAAGAACTGTGTTGATCAAAGTCTGCCTGTTAGGGTGATTCGTGGTCATGAATCATCAAGCAGTTACTCCGGCAAAGTCTACACATATGACGGCTTGTACAAGGTGGCAAATTATTGGGCAGAGAAGGGAATATCTGGATTTACAGTCTTCAAGTTTCGACTCAGGAGGTTTGAGGGACAGCCTACATTAACCACAAATCAGGTTTATTTCACAAATGGACGTGTACCTCAGTCTGTAGCAGAAATACGAGGGTTGGTATGTGAGGATATCACTGAAGGTCAGGAGGATATACCCATTCCTGCTACAAATTTGGTTGATGACCCCCCTGTTCGACCCACAGGTTTCACATATTGTAAGTCTCTTAAGGTTGCAAAAAATGTGAAGCTTCCCATGAATGCCACTGGATGCAAATGCAAAGGCATTTGCATTGATCCGACAACTTGTGCATGTGCGTTGCGTAATGGCTCTGATTTTCCCTATGTATCTCGGGATGGTGGCAGGTTAGTTGAAGCTAAAGATGTTGTATTTGAATGTGGTCCCAAATGTGGTTGTGGACCTGGTTGCGTGAACCGAACTTCTCAAAAAGGACTTAGATATCGTCTGGAGGTTTTCCGTACAGTAAAGAAAGGATGGGCTGTTAGATCCTGGGATTTCATACCTTCAGGAGCACCGGTTTGTGAGTACACAGGAATACTTGCTAGGACGGAAGATATGGATAGTGTATTGGAAAACAATTATATTTTTGAGATAGATTGCTTGCAAACAATCAAGGGGCTTGGTGGAAGAGAGAGGCGGTCACAAAATGAAGCATTTCCTGCAAATCTTTTGGGCAAATCTGATGACCAAGGTGCTGAAAGTGCGCCAGAGTTTTGTATTGATGCAGGATCTACTGGAAATATTGCTAGGTTTATAAACCATTGCTGTGAGCCTAATCTGTTTGTTCAATGTGTTTTGAGCACACATGATGATTTGAGATTGGCTCGAGTAATGCTGTTTGCTGCTGACAACATACCCCCTTTGCAGGAGCTGACATATGACTATGGCTATGCGCTTGATAGCGTCTTGGGCCCAGATGGGAAGATAAAGCAAATGCCGTGCTATTGTGGAGCCACAGGCTGCAGGAAGCGATTATTCTAA 2208 0.4524 MVSTRAEKSSECKIAVKHGGKGAKRRENSRESKESPMQQRRISARIQAQQRAAEELEVRRKTVVLEDDEKKCDEVTVVPAKVNKRCRMSNGEESVGNGEVVSEQPKRMKKKPVSSAKREVNHEVKVDSKNVKQEVKRKVQDAKRTADSENANGEVRCEVEDGKRTVDLENGVGVLADKSSSVKVKETIRLFNKHYLHFVQAEEKRCGKVEADRKAAKKGSKSKKGAPPEDSKTTAKRPDLKAISKMMENNEILYPEKKVGNIPGIEVGHQFYSRAEMVAVGFHSHWLNGIDYMGLSYTKLYSSYTFPVAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQKLERGNLALKNCVDQSLPVRVIRGHESSSSYSGKVYTYDGLYKVANYWAEKGISGFTVFKFRLRRFEGQPTLTTNQVYFTNGRVPQSVAEIRGLVCEDITEGQEDIPIPATNLVDDPPVRPTGFTYCKSLKVAKNVKLPMNATGCKCKGICIDPTTCACALRNGSDFPYVSRDGGRLVEAKDVVFECGPKCGCGPGCVNRTSQKGLRYRLEVFRTVKKGWAVRSWDFIPSGAPVCEYTGILARTEDMDSVLENNYIFEIDCLQTIKGLGGRERRSQNEAFPANLLGKSDDQGAESAPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHDDLRLARVMLFAADNIPPLQELTYDYGYALDSVLGPDGKIKQMPCYCGATGCRKRLF* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02393 735 SMART PostSET_3 719 735 IPR003616 -
Rops8g02393 735 MobiDBLite consensus disorder prediction 89 152 - -
Rops8g02393 735 ProSiteProfiles Pre-SET domain profile. 491 553 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops8g02393 735 SMART set_7 556 711 IPR001214 GO:0005515
Rops8g02393 735 Pfam SAD/SRA domain 259 417 IPR003105 -
Rops8g02393 735 Coils Coil 39 59 - -
Rops8g02393 735 ProSiteProfiles SET domain profile. 556 705 IPR001214 GO:0005515
Rops8g02393 735 Gene3D SET domain 439 735 IPR046341 -
Rops8g02393 735 SUPERFAMILY SET domain 441 712 IPR046341 -
Rops8g02393 735 Pfam Pre-SET motif 447 548 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops8g02393 735 ProSiteProfiles YDG domain profile. 260 413 IPR003105 -
Rops8g02393 735 MobiDBLite consensus disorder prediction 1 42 - -
Rops8g02393 735 SMART preset_2 444 540 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops8g02393 735 SUPERFAMILY PUA domain-like 242 433 IPR015947 -
Rops8g02393 735 Pfam SET domain 567 705 IPR001214 GO:0005515
Rops8g02393 735 Coils Coil 132 152 - -
Rops8g02393 735 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 32 727 - -
Rops8g02393 735 MobiDBLite consensus disorder prediction 103 152 - -
Rops8g02393 735 Gene3D - 243 430 IPR036987 -
Rops8g02393 735 MobiDBLite consensus disorder prediction 10 38 - -
Rops8g02393 735 MobiDBLite consensus disorder prediction 209 238 - -
Rops8g02393 735 SMART G9a_1 255 417 IPR003105 -
Rops8g02393 735 ProSiteProfiles Post-SET domain profile. 719 735 IPR003616 -
Rops8g02393 735 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 86 735 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02393 Rops-Chr8 55345359 55358495 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02393 246 735 EF-hand Containing Proteins AT5G13960 67.617 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops8g02393 SAD_SRA 1.5e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02393 K11420 - gmx:100796701 1055.82