Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02389 ATGTCCATCTTGCCCTCACAAACCCAAGCACCATCCTCATCCTCTTCATCTGCACCATCTCCAAACCCTAATTCCCAACATGGAATCCCAGTCAGCAGCAACCCCTCTCCTCAACCCTTCTCTTCCCTTTCTCCTCCGCAACTCAACGACGCTCTCCGATCTCTCCAGATCTCCGATGTTCCAGGTCCATCAACTCCAGCTGCAGAAGATTCTGGTGGACCTTCCGAAAAGGTGACAGAATCAGGGTCTTCAAGTGGTATGAAGGCTTCATCTCAGCAGAACTCTAGAACACATTCTAGGAGTCACTCAGGAAGACGGACGGTTGGATCATCCCAGTCCATGGGGAGGACAACAGGAACAGTTTATTCTCATAGAAATCAACAGACTCCTGGTTCTGTAAATTCTCATGGAAGCCCCCCTTCAGCAGGGAGGAAATCTCAAACAGTGAATGGAAATTACTTGCTCAATTTTCAATATGATCCAATATCCCGTTCTCAACCTAGGGGTCCTCTTCCTCCCCCTCCTGCAAGAAGGCAGCGGAAAAGAAAACCGTACAACAAAGATTTGTTTCTGCAGGCAAATTACAAATTCATGGTGCTAGATTCAGGGAATTATTCTCCTGAGTCTATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACTTATTCGACCCCCTTTCCAGTTCAGTGTCCAATTTGTTTGGAGTATCCCCTGTGTCCGCAAATAACCTCTTGTGGACATATTTTCTGTTTCCCATGTATTCTACAATACTTATTATTGGGTGAAGAGGATCACAAAGGTGATTGCTGGAAAAGGTGTCCTTTATGCTTTGTGATGATATCTGCTAAGGATTTATATACAGTCCACATCACAAATGTCAATCAGTATCGAGTAGGAGATAATGTTGAGTTCACCTTTTTAACACGAAAAAGGGATTCATTTACGCTGTCACATAAAAATAAACAAGAGACTGATATCACATTATGTGGCAATGGAGATTTATGTGATCCCTTTTCTAAGTTCACACTTACGTCAGACGTAGATCTCTCAGTGAGACATGCAATATCAGATCTAGATAGTTGGCTAGCCAGAGCTGATTCAGGCCTTGTTGATGACCTGGAGAAGCTTCCGTATGTTTGTGCTGCACTGCAACAATTAGAACAGAGGAAGAAGTATTGGAATGAGCACAGGGCTTGTGACAGTGAAAAATCTTCTAAGCTTATTGATTATGGACATCAGTTGCCATCAACAGTTGCAAATGCTATGGACATGGATGATGAAAACTGTTCTAATGGATCAAGAACTTCCTCTACAGATTTCCATGACCAAAGTAAGGTTATAATATTGGATAAGTCAATTACTGGAGACTGTCAGGATCAAACTTTGGATGTGGAGAAAGTATCAATTGAGCAGGAAATGAATTTATCTTCTTTGTATGAGGAGAAAAATGGCATCGGAGATGCAAAGGAAAATGATTCATACAATTTCTATCAGGCTACTGATGGTCAGCATCTAATTCTTCATCCTCTGAACATGAAGTGTTTACTTCACCATTATGGGAGCTATGATATGCTTCCTCACAGAATAAGTGGAAGGATTCTACAATTGGAGACAGTTACTCAGTCTGAGGCCATGAGGAGGCGGTATCGATTCCTAAGTCATTTTCCATTAACCACAACATTTCAGCTTTGTGAAATTGATTTGAGTGAGATGTTGCCTCCTGAAGCACTGGCTCCATTTATGGATGAAATAAAAAAGCGTGCAAATCAGAGGAAGCAACTTGCAAAGAAGGAACGAAAGGAAAAAATAAAGGCTGAAGCTACGTCGACATATTCTCTTCCCACATCAACAAGTTATCAGCTTGCTTACCGTGATGATCCTCCCACATTCACCATTGATGACTTTGAAGCTCTGGGAAATTCAGCTACGTCATCAAGTCCTCCAGTAGCCGGGGAGAGAAAGTCGTTCTCAAATGTTACTAGGCTTGGTTTTGCTGCTGGTCATGATTCTCCATCCTTAGAAATTCAAGAAACTACTGGTCTACATAATAACAATAAGATCATCGACTCTTCCAGTACAACAGGTTTGAGAAATGCGGAGACACCATCGTACTCCAATGTTACATCCAGAGCAGAATCTAACATAAGCTTGAATGCACCAAAGACAAACGGCTTGGGGAAGAAGGGGAAGAAACCAAATCGAGTTCTTCTGTCAACAGCTGGGGGCAGGCGTTATTGA 2250 0.4222 MSILPSQTQAPSSSSSSAPSPNPNSQHGIPVSSNPSPQPFSSLSPPQLNDALRSLQISDVPGPSTPAAEDSGGPSEKVTESGSSSGMKASSQQNSRTHSRSHSGRRTVGSSQSMGRTTGTVYSHRNQQTPGSVNSHGSPPSAGRKSQTVNGNYLLNFQYDPISRSQPRGPLPPPPARRQRKRKPYNKDLFLQANYKFMVLDSGNYSPESMDPDKMLQWEDIICVTYSTPFPVQCPICLEYPLCPQITSCGHIFCFPCILQYLLLGEEDHKGDCWKRCPLCFVMISAKDLYTVHITNVNQYRVGDNVEFTFLTRKRDSFTLSHKNKQETDITLCGNGDLCDPFSKFTLTSDVDLSVRHAISDLDSWLARADSGLVDDLEKLPYVCAALQQLEQRKKYWNEHRACDSEKSSKLIDYGHQLPSTVANAMDMDDENCSNGSRTSSTDFHDQSKVIILDKSITGDCQDQTLDVEKVSIEQEMNLSSLYEEKNGIGDAKENDSYNFYQATDGQHLILHPLNMKCLLHHYGSYDMLPHRISGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEIDLSEMLPPEALAPFMDEIKKRANQRKQLAKKERKEKIKAEATSTYSLPTSTSYQLAYRDDPPTFTIDDFEALGNSATSSSPPVAGERKSFSNVTRLGFAAGHDSPSLEIQETTGLHNNNKIIDSSSTTGLRNAETPSYSNVTSRAESNISLNAPKTNGLGKKGKKPNRVLLSTAGGRRY* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02389 749 MobiDBLite consensus disorder prediction 76 148 - -
Rops8g02389 749 CDD RING-HC_RNF10 232 289 - -
Rops8g02389 749 PANTHER RING FINGER 10 FAMILY MEMBER 64 749 IPR039739 -
Rops8g02389 749 MobiDBLite consensus disorder prediction 1 148 - -
Rops8g02389 749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 328 IPR013083 -
Rops8g02389 749 MobiDBLite consensus disorder prediction 1 61 - -
Rops8g02389 749 SMART ring_2 234 280 IPR001841 -
Rops8g02389 749 SUPERFAMILY RING/U-box 233 287 - -
Rops8g02389 749 MobiDBLite consensus disorder prediction 693 725 - -
Rops8g02389 749 ProSiteProfiles Zinc finger RING-type profile. 234 280 IPR001841 -
Rops8g02389 749 FunFam RING finger protein 10 227 295 - -
Rops8g02389 749 Coils Coil 585 609 - -
Rops8g02389 749 MobiDBLite consensus disorder prediction 160 184 - -
Rops8g02389 749 MobiDBLite consensus disorder prediction 693 749 - -
Rops8g02389 749 Pfam Zinc finger, C3HC4 type (RING finger) 234 280 IPR018957 GO:0046872
Rops8g02389 749 ProSitePatterns Zinc finger RING-type signature. 249 258 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02389 63 699 C3H Transcription Factor Family AT3G26730 53.092 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02389 K26979 - gmx:100798764 1167.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02389 8 55284340 55292100 Rops8g02389 8 55284340 55292100 ECH