Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02383 ATGGAGAGATTCACGCTACCCTTAGCACCAAGAATTCACACTTCTAACACCATTCCTTGGATGGAACCACAACAAGTTGAAGAAGACGCAGCCTCATGGACCAAACCTAACTCCGAAGCTAACCACCACAACGAGGACATTGCCATTGCAATGGGTACTCCTCTCCCTTTCTTCAAACCCATTCCAGAACCAGAACCCGAACCTGACTATTACATGAACTCTGCTATTAGAGGAAGTAGTAGTAGTGTTGTTGTTCCCTTTGTTTCAAACCCAACAACAACAGATAACTTTCTCATGAACCAAAACATTAACATGGATTCTACCTTCTCTATGGACCCATCACTTTCACAACCTTTCTTCAACAACAACAATAACAATAGCATTAACCCTTTTGACACTGGCTTTGAAAATGGGTTCTTTATGGGGAACCATTCTTCTAATTCCCCTGTTTTGATGGGTGGTTTTTCTCAGATGGGTACCCTTGAGCTGAGTTCGGGTTCCGAGTTTCCAGTGAGTCTTGAACTCGAAGCCTTCGGTGGTGATGGTGGTGGTTCTTCTTCTGGGAACGCTCCTCCGTTTCCCAAGGCTCTTGAGGGGGTGGCGCAACAACCTACGTTGTTCCAGAAACGGAGAGGGTCGTTGGAGATTTCGAGGTTGGAGACGGTGAAGAACAAGGGGAGGAAGTGGGAAGAAGAAGGGGATGTTGATGTTGTTGATGATTCAATGTCAGGGTTGAATTATGATTCTGATGAGAATGGTACTGTCACTGTTACTGGTAGTGGAGAACACAAGGGGAAGAAGAAGGGTCCGCCTGCAAAAAATCTCATGGCAGAGAGGCGTCGTAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCTGTGGTGCCAAAGATCAGCAAGATGGATAGGGCTTCGATACTTGGGGATGCAGTTGACTACTTGAAGGAGCTACTGCAGCGGATTAATGATCTTCATAATGAACTGGAGACAACTCCACCTGGCACATCACTGCAACCTTCTACGAGCTTTCAATCTTTGACACCCACTCCTCCAACCCTTCCCTGCCGGGTCAAGGAGGAACTATATCCTGGTGCCTTGTCAAGCCCTAAAAACCAGCCTGCGAAGGTGGAAGTTAAGGTAAGGGAAGGAAGAGCTGTCAACATTCATATGTTTTGTACACGCAGACCAGGTCTTTTGCTTTCTACTATGAGGGCTTTGGACAACCTCGGATTGGATGTTCAGCAGGCTGTTATTAGCTGTTTCAATGGCTTTGCTTTAGATGTGTTCAGAGCTGAGCAATGTAGAGAAGGCCAGGATGTGCTCCCTGAGCAAATTAAAGCAGTGCTGTTGGACTCAGCAGGCTATCATGGTATGATGTGA 1383 0.4628 MERFTLPLAPRIHTSNTIPWMEPQQVEEDAASWTKPNSEANHHNEDIAIAMGTPLPFFKPIPEPEPEPDYYMNSAIRGSSSSVVVPFVSNPTTTDNFLMNQNINMDSTFSMDPSLSQPFFNNNNNNSINPFDTGFENGFFMGNHSSNSPVLMGGFSQMGTLELSSGSEFPVSLELEAFGGDGGGSSSGNAPPFPKALEGVAQQPTLFQKRRGSLEISRLETVKNKGRKWEEEGDVDVVDDSMSGLNYDSDENGTVTVTGSGEHKGKKKGPPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINDLHNELETTPPGTSLQPSTSFQSLTPTPPTLPCRVKEELYPGALSSPKNQPAKVEVKVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGYHGMM* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02383 460 SMART finulus 275 324 IPR011598 GO:0046983
Rops8g02383 460 MobiDBLite consensus disorder prediction 240 272 - -
Rops8g02383 460 CDD bHLH_AtAMS_like 274 337 - -
Rops8g02383 460 MobiDBLite consensus disorder prediction 328 351 - -
Rops8g02383 460 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Rops8g02383 460 CDD ACT_UUR-ACR-like 389 449 - -
Rops8g02383 460 Gene3D - 263 332 IPR036638 GO:0046983
Rops8g02383 460 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 129 456 - -
Rops8g02383 460 MobiDBLite consensus disorder prediction 245 259 - -
Rops8g02383 460 FunFam BHLH transcription factor 265 333 - -
Rops8g02383 460 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 337 IPR036638 GO:0046983
Rops8g02383 460 Pfam Helix-loop-helix DNA-binding domain 276 318 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02383 Rops-Chr8 55204865 55208819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02383 108 433 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 56.300 3.30e-114 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g02383 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02383 - - psat:127126761 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02383 8 55204865 55208819 Rops8g02383 8 55204865 55208819 ECH
Rops8g02383 8 55204865 55208819 Rops5g02066 5 44244061 44248702 PCT